Wall clock time and date at job start Sun Mar 29 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99766 * 2 1 4 4 H 1.48500 * 109.47340 * 239.99760 * 3 2 1 5 5 H 1.48503 * 109.47634 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47310 * 120.00097 * 3 2 1 7 7 C 1.37874 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99615 * 175.01726 * 7 2 1 9 9 C 1.50699 * 120.00018 * 355.02257 * 7 2 1 10 10 C 1.53001 * 115.54999 * 279.47090 * 9 7 2 11 11 N 1.46498 * 109.46961 * 320.21837 * 10 9 7 12 12 C 1.34781 * 119.99694 * 184.90706 * 11 10 9 13 13 O 1.21283 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99762 * 180.02562 * 12 11 10 15 15 C 1.53003 * 117.49771 * 248.74771 * 14 12 11 16 16 C 1.53005 * 117.49550 * 180.08951 * 14 12 11 17 17 C 1.53002 * 117.50157 * 65.14685 * 9 7 2 18 18 C 1.53001 * 60.03166 * 107.49645 * 17 9 7 19 19 H 0.96999 * 119.99976 * 5.00153 * 1 2 3 20 20 H 1.09001 * 109.46735 * 80.21572 * 10 9 7 21 21 H 1.08998 * 109.47489 * 200.21743 * 10 9 7 22 22 H 0.96996 * 120.00621 * 4.91118 * 11 10 9 23 23 H 1.08994 * 115.55034 * 34.41724 * 14 12 11 24 24 H 1.09007 * 117.49911 * 359.97438 * 15 14 12 25 25 H 1.08998 * 117.49961 * 145.02180 * 15 14 12 26 26 H 1.09001 * 117.49214 * 214.97777 * 16 14 12 27 27 H 1.08996 * 117.50044 * 359.97438 * 16 14 12 28 28 H 1.08995 * 117.49609 * 214.99849 * 17 9 7 29 29 H 1.08998 * 117.49381 * 359.97438 * 17 9 7 30 30 H 1.09005 * 117.49352 * 107.50124 * 18 17 9 31 31 H 1.08999 * 117.50034 * 252.51392 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1958 -0.0807 9 6 1.2553 -2.4966 0.1144 10 6 0.8332 -2.8935 1.5304 11 7 1.9078 -2.5653 2.4703 12 6 1.7998 -2.9171 3.7669 13 8 0.8132 -3.5057 4.1554 14 6 2.9051 -2.5789 4.7340 15 6 3.7293 -3.7379 5.2982 16 6 2.7239 -3.0071 6.1917 17 6 0.3184 -2.8755 -1.0344 18 6 1.6416 -3.6211 -0.8497 19 1 -0.4850 0.8368 -0.0732 20 1 -0.0698 -2.3490 1.8064 21 1 0.6359 -3.9650 1.5639 22 1 2.6971 -2.0947 2.1597 23 1 3.4223 -1.6380 4.5464 24 1 3.4718 -4.7451 4.9703 25 1 4.7887 -3.5594 5.4822 26 1 3.1223 -2.3480 6.9630 27 1 1.8051 -3.5329 6.4513 28 1 -0.5986 -3.4075 -0.7814 29 1 0.2438 -2.1824 -1.8723 30 1 1.5950 -4.6437 -0.4751 31 1 2.4378 -3.4185 -1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379384695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:58 Heat of formation + Delta-G solvation = 1.536997 kcal Electronic energy + Delta-G solvation = -13688.951951 eV Core-core repulsion = 11357.609969 eV Total energy + Delta-G solvation = -2331.341981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.27070 -36.88514 -35.61841 -33.15176 -32.04474 -26.82182 -25.45231 -23.01813 -22.27211 -21.12943 -19.60454 -19.00463 -16.93939 -16.20607 -15.09289 -14.83236 -14.68199 -14.15794 -13.75164 -13.14306 -12.74966 -12.08501 -11.94499 -11.64560 -11.42486 -11.01520 -10.99214 -10.57763 -10.43821 -10.29884 -10.20088 -9.61315 -9.22580 -9.01023 -8.55722 -8.31506 -7.91977 -6.12469 -4.23073 3.08419 3.22472 3.29452 3.30008 3.91759 4.15040 4.30449 4.97465 5.09109 5.10134 5.19272 5.32142 5.59949 5.68678 5.92869 6.04284 6.13087 6.26947 6.30779 6.50996 6.56321 6.72287 6.93102 7.09833 7.27043 7.39192 7.53004 7.76193 8.30880 8.45936 8.79761 9.01326 9.44490 10.94875 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.010253 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.374567 B = 2730.161289 C = 3316.738190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.691 5.691 12 C 0.529 3.471 13 O -0.566 6.566 14 C -0.188 4.188 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.211 4.211 19 H 0.263 0.737 20 H 0.063 0.937 21 H 0.039 0.961 22 H 0.407 0.593 23 H 0.121 0.879 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -3.382 5.888 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.040 3.960 11 N -0.339 5.339 12 C 0.315 3.685 13 O -0.447 6.447 14 C -0.209 4.209 15 C -0.194 4.194 16 C -0.190 4.190 17 C -0.188 4.188 18 C -0.248 4.248 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.058 0.942 22 H 0.243 0.757 23 H 0.139 0.861 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.376 -3.654 6.179 8.968 hybrid contribution 0.736 1.312 -0.360 1.547 sum 6.112 -2.342 5.818 8.758 Atomic orbital electron populations 1.69977 1.05946 1.27077 1.47507 1.25004 0.94799 0.98949 0.94122 0.86702 0.79679 0.83173 0.78717 1.20216 1.21249 1.20038 1.20288 0.92688 0.88569 1.52823 0.92074 1.19043 0.98878 0.93010 0.86464 1.20852 0.89330 0.96771 0.89075 1.45961 1.23358 1.57327 1.07295 1.19567 0.86769 0.79263 0.82936 1.90621 1.32376 1.43397 1.78302 1.22247 1.01406 1.01054 0.96226 1.22890 0.96973 0.96363 1.03184 1.22900 1.01584 1.03055 0.91441 1.22502 0.91356 1.01882 1.03097 1.23072 0.99779 0.95742 1.06192 0.92734 0.91835 0.94243 0.75665 0.86099 0.88478 0.88196 0.88400 0.87625 0.91790 0.89746 0.91638 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 12.86 55.43 0.71 -23.17 16 2 C 0.08 1.99 5.44 -17.82 -0.10 1.89 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.51 -12.78 7.36 -34.44 -0.25 -13.03 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.63 1.74 -155.62 -0.27 0.36 16 10 C 0.16 3.79 5.75 -4.04 -0.02 3.76 16 11 N -0.69 -14.43 5.38 -60.29 -0.32 -14.75 16 12 C 0.53 10.61 7.61 -10.98 -0.08 10.52 16 13 O -0.57 -13.18 16.25 5.55 0.09 -13.09 16 14 C -0.19 -2.87 6.19 -91.77 -0.57 -3.43 16 15 C -0.16 -1.95 10.24 -26.69 -0.27 -2.22 16 16 C -0.15 -2.01 10.05 -26.69 -0.27 -2.27 16 17 C -0.15 -3.46 9.43 -26.73 -0.25 -3.72 16 18 C -0.21 -4.47 9.89 -26.69 -0.26 -4.74 16 19 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 20 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 21 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 22 H 0.41 8.09 7.35 -40.82 -0.30 7.79 16 23 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 24 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 1.54 7.67 -51.93 -0.40 1.15 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 30 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -28.82 271.37 -7.27 -36.09 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.46 Total: 8.66 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.35 Total: -12.88 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.39 Total: -37.92 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.82 -7.27 -36.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379384695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.623 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds