Wall clock time and date at job start Sun Mar 29 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99766 * 2 1 4 4 H 1.48500 * 109.47340 * 239.99760 * 3 2 1 5 5 H 1.48503 * 109.47634 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47310 * 120.00097 * 3 2 1 7 7 C 1.37874 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99615 * 175.01726 * 7 2 1 9 9 C 1.50699 * 120.00018 * 355.02257 * 7 2 1 10 10 C 1.53001 * 115.54999 * 279.47090 * 9 7 2 11 11 N 1.46498 * 109.46961 * 320.21837 * 10 9 7 12 12 C 1.34781 * 119.99694 * 184.90706 * 11 10 9 13 13 O 1.21283 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99762 * 180.02562 * 12 11 10 15 15 C 1.53003 * 117.49771 * 248.74771 * 14 12 11 16 16 C 1.53005 * 117.49550 * 180.08951 * 14 12 11 17 17 C 1.53002 * 117.50157 * 65.14685 * 9 7 2 18 18 C 1.53001 * 60.03166 * 107.49645 * 17 9 7 19 19 H 0.96999 * 119.99976 * 5.00153 * 1 2 3 20 20 H 1.09001 * 109.46735 * 80.21572 * 10 9 7 21 21 H 1.08998 * 109.47489 * 200.21743 * 10 9 7 22 22 H 0.96996 * 120.00621 * 4.91118 * 11 10 9 23 23 H 1.08994 * 115.55034 * 34.41724 * 14 12 11 24 24 H 1.09007 * 117.49911 * 359.97438 * 15 14 12 25 25 H 1.08998 * 117.49961 * 145.02180 * 15 14 12 26 26 H 1.09001 * 117.49214 * 214.97777 * 16 14 12 27 27 H 1.08996 * 117.50044 * 359.97438 * 16 14 12 28 28 H 1.08995 * 117.49609 * 214.99849 * 17 9 7 29 29 H 1.08998 * 117.49381 * 359.97438 * 17 9 7 30 30 H 1.09005 * 117.49352 * 107.50124 * 18 17 9 31 31 H 1.08999 * 117.50034 * 252.51392 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0814 -1.1958 -0.0807 9 6 1.2553 -2.4966 0.1144 10 6 0.8332 -2.8935 1.5304 11 7 1.9078 -2.5653 2.4703 12 6 1.7998 -2.9171 3.7669 13 8 0.8132 -3.5057 4.1554 14 6 2.9051 -2.5789 4.7340 15 6 3.7293 -3.7379 5.2982 16 6 2.7239 -3.0071 6.1917 17 6 0.3184 -2.8755 -1.0344 18 6 1.6416 -3.6211 -0.8497 19 1 -0.4850 0.8368 -0.0732 20 1 -0.0698 -2.3490 1.8064 21 1 0.6359 -3.9650 1.5639 22 1 2.6971 -2.0947 2.1597 23 1 3.4223 -1.6380 4.5464 24 1 3.4718 -4.7451 4.9703 25 1 4.7887 -3.5594 5.4822 26 1 3.1223 -2.3480 6.9630 27 1 1.8051 -3.5329 6.4513 28 1 -0.5986 -3.4075 -0.7814 29 1 0.2438 -2.1824 -1.8723 30 1 1.5950 -4.6437 -0.4751 31 1 2.4378 -3.4185 -1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379384695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:58 Heat of formation + Delta-G solvation = -16.095918 kcal Electronic energy + Delta-G solvation = -13689.716571 eV Core-core repulsion = 11357.609969 eV Total energy + Delta-G solvation = -2332.106602 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82285 -38.61870 -36.92546 -34.88682 -34.01914 -28.55436 -27.39662 -24.43832 -23.26416 -22.92734 -21.40266 -20.61422 -18.43588 -17.98838 -16.80438 -16.53224 -16.24266 -15.80686 -15.21646 -14.82113 -14.48401 -13.77968 -13.52113 -13.43763 -12.94291 -12.78022 -12.40246 -12.37469 -12.02532 -11.50675 -11.49498 -11.32994 -11.00794 -10.79250 -10.46109 -10.12301 -9.72811 -8.10379 -6.25850 1.45187 1.46208 1.52961 1.60981 2.38670 2.45946 2.98271 3.18070 3.45207 3.84595 3.96100 4.06233 4.23836 4.34048 4.49524 4.67566 4.70277 4.75924 4.93253 4.98974 5.06513 5.07762 5.24116 5.26901 5.43612 5.61133 5.73053 5.76223 6.36300 6.79387 6.86986 7.41003 7.44864 8.96724 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.010253 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.374567 B = 2730.161289 C = 3316.738190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.004 3.996 10 C 0.176 3.824 11 N -0.691 5.691 12 C 0.523 3.477 13 O -0.606 6.606 14 C -0.208 4.208 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.181 4.181 19 H 0.259 0.741 20 H 0.024 0.976 21 H 0.041 0.959 22 H 0.412 0.588 23 H 0.142 0.858 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -3.363 6.683 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.003 3.997 10 C 0.051 3.949 11 N -0.340 5.340 12 C 0.311 3.689 13 O -0.490 6.490 14 C -0.229 4.229 15 C -0.171 4.171 16 C -0.185 4.185 17 C -0.198 4.198 18 C -0.218 4.218 19 H 0.068 0.932 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.250 0.750 23 H 0.159 0.841 24 H 0.106 0.894 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.832 -3.640 6.974 11.101 hybrid contribution -0.039 1.243 -0.604 1.383 sum 7.793 -2.397 6.370 10.347 Atomic orbital electron populations 1.70118 1.07471 1.27455 1.49204 1.25729 0.95389 1.02137 0.94037 0.85737 0.78375 0.79096 0.79214 1.19616 1.22085 1.18732 1.20570 0.93038 0.89207 1.51693 0.91446 1.19134 0.99828 0.93914 0.86825 1.20525 0.88743 0.96094 0.89502 1.45921 1.22841 1.57624 1.07604 1.20457 0.87460 0.77963 0.83026 1.90595 1.34373 1.45144 1.78861 1.22246 1.01102 1.03334 0.96184 1.23053 0.98572 0.94740 1.00757 1.23023 1.01288 1.03271 0.90925 1.22427 0.92622 1.02401 1.02398 1.23075 0.98347 0.95947 1.04453 0.93209 0.95764 0.94111 0.74998 0.84052 0.89409 0.84537 0.85151 0.89751 0.91344 0.91643 0.89504 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.68 12.86 21.45 0.28 -50.40 16 2 C 0.03 1.48 5.44 84.65 0.46 1.94 16 3 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.51 -25.31 7.36 25.60 0.19 -25.12 16 8 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.17 1.74 -52.90 -0.09 0.08 16 10 C 0.18 8.29 5.75 86.38 0.50 8.78 16 11 N -0.69 -28.70 5.38 -463.05 -2.49 -31.19 16 12 C 0.52 20.78 7.61 87.66 0.67 21.45 16 13 O -0.61 -28.69 16.25 -3.04 -0.05 -28.74 16 14 C -0.21 -5.86 6.19 -11.54 -0.07 -5.93 16 15 C -0.13 -2.89 10.24 30.62 0.31 -2.57 16 16 C -0.15 -3.50 10.05 30.62 0.31 -3.20 16 17 C -0.16 -7.42 9.43 30.60 0.29 -7.13 16 18 C -0.18 -7.41 9.89 30.62 0.30 -7.10 16 19 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 20 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.04 1.87 7.94 -2.39 -0.02 1.85 16 22 H 0.41 15.99 7.35 -92.71 -0.68 15.31 16 23 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 24 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.08 2.39 7.67 -2.39 -0.02 2.37 16 28 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.09 3.18 8.09 -2.38 -0.02 3.16 16 31 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -62.48 271.37 3.06 -59.42 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.43 Total: 26.88 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 2.86 Total: -18.81 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.22 Total: -81.59 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -62.48 3.06 -59.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379384695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.324 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds