Wall clock time and date at job start Sun Mar 29 2020 22:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48496 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47270 * 300.00142 * 3 2 1 6 6 H 1.48509 * 109.47111 * 59.99803 * 3 2 1 7 7 C 1.37878 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99864 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47252 * 177.73013 * 9 7 2 11 11 C 1.46900 * 111.00330 * 163.31171 * 10 9 7 12 12 C 1.53786 * 113.61112 * 38.09097 * 11 10 9 13 13 C 1.53955 * 87.02059 * 220.04675 * 12 11 10 14 14 C 1.53780 * 113.61503 * 300.48807 * 11 10 9 15 15 C 1.46893 * 111.00448 * 287.27196 * 10 9 7 16 16 C 1.53777 * 113.62131 * 170.06230 * 15 10 9 17 17 C 1.53955 * 87.02214 * 220.04653 * 16 15 10 18 18 C 1.53779 * 87.11068 * 25.36235 * 17 16 15 19 19 H 0.97001 * 120.00485 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46972 * 297.73612 * 9 7 2 21 21 H 1.09005 * 109.47100 * 57.72841 * 9 7 2 22 22 H 1.08990 * 112.85333 * 169.28977 * 11 10 9 23 23 H 1.09000 * 113.61223 * 334.57210 * 12 11 10 24 24 H 1.08999 * 113.61045 * 105.46905 * 12 11 10 25 25 H 1.08995 * 113.53627 * 270.81571 * 13 12 11 26 26 H 1.08996 * 113.73931 * 139.94352 * 13 12 11 27 27 H 1.09002 * 113.61509 * 254.52487 * 14 11 10 28 28 H 1.09003 * 113.61798 * 25.43366 * 14 11 10 29 29 H 1.09003 * 112.84502 * 301.26208 * 15 10 9 30 30 H 1.09001 * 113.61073 * 334.56928 * 16 15 10 31 31 H 1.09003 * 113.61497 * 105.46678 * 16 15 10 32 32 H 1.08994 * 113.53615 * 270.80874 * 17 16 15 33 33 H 1.08998 * 113.74067 * 139.94192 * 17 16 15 34 34 H 1.08997 * 113.61500 * 220.09295 * 18 17 16 35 35 H 1.08995 * 113.61831 * 89.18816 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2048 -3.6151 -0.0537 11 6 1.5618 -4.8766 0.3375 12 6 0.1167 -5.0147 -0.1700 13 6 -0.2186 -5.6383 1.1971 14 6 0.9793 -4.8558 1.7606 15 6 2.8116 -3.7248 -1.3869 16 6 3.9900 -4.7109 -1.4483 17 6 4.6901 -3.6924 -2.3663 18 6 3.8264 -2.6113 -1.6955 19 1 -0.4851 0.8400 -0.0004 20 1 0.6550 -2.5744 0.9099 21 1 0.5946 -2.5396 -0.8687 22 1 2.1819 -5.7492 0.1324 23 1 -0.3770 -4.0592 -0.3470 24 1 0.0115 -5.7077 -1.0047 25 1 -0.0864 -6.7198 1.2264 26 1 -1.1787 -5.3181 1.6018 27 1 1.5694 -5.4207 2.4823 28 1 0.7217 -3.8567 2.1124 29 1 2.0749 -3.8751 -2.1761 30 1 4.4912 -4.8524 -0.4908 31 1 3.7471 -5.6513 -1.9431 32 1 4.4679 -3.8349 -3.4238 33 1 5.7565 -3.5841 -2.1688 34 1 3.4515 -1.8591 -2.3895 35 1 4.2827 -2.1776 -0.8057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379396694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:22 Heat of formation + Delta-G solvation = 44.421371 kcal Electronic energy + Delta-G solvation = -14513.475037 eV Core-core repulsion = 12319.825756 eV Total energy + Delta-G solvation = -2193.649281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.31242 -37.30424 -33.37437 -31.73282 -27.26488 -25.11612 -24.77523 -24.28194 -23.20583 -21.13717 -18.83407 -18.00540 -16.61056 -15.27246 -14.92802 -14.86058 -14.33212 -14.14149 -12.90689 -12.34462 -12.14914 -11.89511 -11.87479 -11.72780 -11.22931 -11.10472 -10.87071 -10.59759 -10.51323 -10.18624 -10.00432 -9.95965 -9.77777 -9.41255 -9.25856 -8.87924 -8.33300 -7.10147 -5.96234 -3.95283 3.33349 3.41193 3.45544 4.47208 4.93119 5.22732 5.24180 5.28859 5.30311 5.41393 5.45725 5.52492 5.69343 5.70546 6.04852 6.10587 6.18742 6.22940 6.31479 6.35534 6.38747 6.50272 6.54056 6.72453 6.84444 6.92140 6.98920 7.14967 7.36132 7.49809 7.93342 8.21965 8.34962 8.65741 9.13340 9.67948 11.14676 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.012692 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.634684 B = 2205.665031 C = 3106.056341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.500 4.500 8 H 0.071 0.929 9 C 0.191 3.809 10 N -0.517 5.517 11 C 0.066 3.934 12 C -0.180 4.180 13 C -0.141 4.141 14 C -0.132 4.132 15 C 0.074 3.926 16 C -0.132 4.132 17 C -0.152 4.152 18 C -0.105 4.105 19 H 0.258 0.742 20 H 0.032 0.968 21 H -0.006 1.006 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -9.067 -1.407 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.539 4.539 8 H 0.089 0.911 9 C 0.066 3.934 10 N -0.240 5.240 11 C -0.044 4.044 12 C -0.220 4.220 13 C -0.179 4.179 14 C -0.170 4.170 15 C -0.035 4.035 16 C -0.170 4.170 17 C -0.190 4.190 18 C -0.143 4.143 19 H 0.068 0.932 20 H 0.050 0.950 21 H 0.011 0.989 22 H 0.103 0.897 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.197 -8.829 -1.071 9.834 hybrid contribution -0.443 0.772 -0.620 1.085 sum 3.754 -8.057 -1.690 9.048 Atomic orbital electron populations 1.69969 1.06010 1.26392 1.51851 1.24985 0.94785 0.99135 0.95890 0.86538 0.80201 0.83896 0.77389 1.19634 1.21282 1.21200 1.21433 0.93976 0.89760 1.48687 0.91125 1.19771 0.90179 0.87295 0.96111 1.62315 1.34542 1.02973 1.24129 1.23045 0.91766 0.93776 0.95770 1.23723 1.00291 1.01687 0.96267 1.22717 0.98729 0.98764 0.97732 1.23088 0.96230 1.01094 0.96542 1.22791 0.93652 0.96482 0.90605 1.23018 0.98013 0.96294 0.99702 1.22882 0.98938 0.98834 0.98389 1.22887 0.95616 0.95537 1.00236 0.93201 0.95028 0.98853 0.89657 0.88750 0.92965 0.91177 0.91944 0.92342 0.88935 0.93428 0.89880 0.93024 0.91263 0.92110 0.91950 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.50 -13.75 8.01 -34.44 -0.28 -14.03 16 8 H 0.07 1.91 5.27 -52.49 -0.28 1.64 16 9 C 0.19 4.88 3.28 -4.98 -0.02 4.87 16 10 N -0.52 -11.07 4.57 -218.22 -1.00 -12.07 16 11 C 0.07 1.21 3.72 -66.90 -0.25 0.97 16 12 C -0.18 -3.21 7.36 -25.82 -0.19 -3.40 16 13 C -0.14 -2.20 8.09 -25.83 -0.21 -2.41 16 14 C -0.13 -2.30 7.53 -25.92 -0.20 -2.49 16 15 C 0.07 1.43 3.10 -66.90 -0.21 1.23 16 16 C -0.13 -2.11 6.91 -25.83 -0.18 -2.29 16 17 C -0.15 -2.35 8.09 -25.83 -0.21 -2.55 16 18 C -0.11 -2.03 5.80 -25.92 -0.15 -2.18 16 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 20 H 0.03 0.86 5.74 -51.93 -0.30 0.56 16 21 H -0.01 -0.17 7.01 -51.93 -0.36 -0.54 16 22 H 0.09 1.43 7.38 -51.93 -0.38 1.04 16 23 H 0.09 1.97 5.84 -51.93 -0.30 1.66 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.86 6.23 -51.93 -0.32 1.53 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.93 6.50 -51.93 -0.34 1.59 16 LS Contribution 269.74 15.07 4.06 4.06 Total: -1.00 -28.56 269.74 -8.84 -37.40 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.65 Total: 0.88 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.98 Total: -20.91 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.26 Total: -38.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.56 -8.84 -37.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.824 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds