Wall clock time and date at job start Sun Mar 29 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48496 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47270 * 300.00142 * 3 2 1 6 6 H 1.48509 * 109.47111 * 59.99803 * 3 2 1 7 7 C 1.37878 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99864 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47252 * 177.73013 * 9 7 2 11 11 C 1.46900 * 111.00330 * 163.31171 * 10 9 7 12 12 C 1.53786 * 113.61112 * 38.09097 * 11 10 9 13 13 C 1.53955 * 87.02059 * 220.04675 * 12 11 10 14 14 C 1.53780 * 113.61503 * 300.48807 * 11 10 9 15 15 C 1.46893 * 111.00448 * 287.27196 * 10 9 7 16 16 C 1.53777 * 113.62131 * 170.06230 * 15 10 9 17 17 C 1.53955 * 87.02214 * 220.04653 * 16 15 10 18 18 C 1.53779 * 87.11068 * 25.36235 * 17 16 15 19 19 H 0.97001 * 120.00485 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46972 * 297.73612 * 9 7 2 21 21 H 1.09005 * 109.47100 * 57.72841 * 9 7 2 22 22 H 1.08990 * 112.85333 * 169.28977 * 11 10 9 23 23 H 1.09000 * 113.61223 * 334.57210 * 12 11 10 24 24 H 1.08999 * 113.61045 * 105.46905 * 12 11 10 25 25 H 1.08995 * 113.53627 * 270.81571 * 13 12 11 26 26 H 1.08996 * 113.73931 * 139.94352 * 13 12 11 27 27 H 1.09002 * 113.61509 * 254.52487 * 14 11 10 28 28 H 1.09003 * 113.61798 * 25.43366 * 14 11 10 29 29 H 1.09003 * 112.84502 * 301.26208 * 15 10 9 30 30 H 1.09001 * 113.61073 * 334.56928 * 16 15 10 31 31 H 1.09003 * 113.61497 * 105.46678 * 16 15 10 32 32 H 1.08994 * 113.53615 * 270.80874 * 17 16 15 33 33 H 1.08998 * 113.74067 * 139.94192 * 17 16 15 34 34 H 1.08997 * 113.61500 * 220.09295 * 18 17 16 35 35 H 1.08995 * 113.61831 * 89.18816 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2048 -3.6151 -0.0537 11 6 1.5618 -4.8766 0.3375 12 6 0.1167 -5.0147 -0.1700 13 6 -0.2186 -5.6383 1.1971 14 6 0.9793 -4.8558 1.7606 15 6 2.8116 -3.7248 -1.3869 16 6 3.9900 -4.7109 -1.4483 17 6 4.6901 -3.6924 -2.3663 18 6 3.8264 -2.6113 -1.6955 19 1 -0.4851 0.8400 -0.0004 20 1 0.6550 -2.5744 0.9099 21 1 0.5946 -2.5396 -0.8687 22 1 2.1819 -5.7492 0.1324 23 1 -0.3770 -4.0592 -0.3470 24 1 0.0115 -5.7077 -1.0047 25 1 -0.0864 -6.7198 1.2264 26 1 -1.1787 -5.3181 1.6018 27 1 1.5694 -5.4207 2.4823 28 1 0.7217 -3.8567 2.1124 29 1 2.0749 -3.8751 -2.1761 30 1 4.4912 -4.8524 -0.4908 31 1 3.7471 -5.6513 -1.9431 32 1 4.4679 -3.8349 -3.4238 33 1 5.7565 -3.5841 -2.1688 34 1 3.4515 -1.8591 -2.3895 35 1 4.2827 -2.1776 -0.8057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379396694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:21 Heat of formation + Delta-G solvation = 27.298850 kcal Electronic energy + Delta-G solvation = -14514.217526 eV Core-core repulsion = 12319.825756 eV Total energy + Delta-G solvation = -2194.391769 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83579 -38.70948 -35.32740 -33.59697 -29.23386 -26.55611 -26.26359 -25.72475 -25.03615 -22.73534 -20.32436 -19.55682 -18.53627 -17.01083 -16.67947 -16.29787 -15.99574 -15.75207 -14.59963 -13.99267 -13.78635 -13.69674 -13.32945 -13.24515 -12.96514 -12.68686 -12.53009 -12.47421 -12.18024 -11.74215 -11.51970 -11.45266 -11.27034 -11.06040 -10.82804 -10.74266 -10.46146 -8.85343 -8.14373 -6.21171 1.38901 1.39919 1.52812 2.42093 3.17823 3.34788 3.81792 3.85638 3.91245 3.95153 4.08364 4.12099 4.23739 4.28005 4.66352 4.78914 4.83297 4.91311 4.92972 5.03027 5.07161 5.09333 5.11853 5.22307 5.27599 5.30420 5.39787 5.51805 5.65945 5.69836 5.79325 6.18728 6.53690 6.78445 6.97804 7.47245 8.96589 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.012692 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.634684 B = 2205.665031 C = 3106.056341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.214 3.786 10 N -0.523 5.523 11 C 0.060 3.940 12 C -0.184 4.184 13 C -0.123 4.123 14 C -0.135 4.135 15 C 0.057 3.943 16 C -0.113 4.113 17 C -0.131 4.131 18 C -0.117 4.117 19 H 0.260 0.740 20 H 0.007 0.993 21 H -0.043 1.043 22 H 0.115 0.885 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -10.709 -1.593 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.088 3.912 10 N -0.246 5.246 11 C -0.049 4.049 12 C -0.223 4.223 13 C -0.160 4.160 14 C -0.173 4.173 15 C -0.051 4.051 16 C -0.151 4.151 17 C -0.169 4.169 18 C -0.155 4.155 19 H 0.069 0.931 20 H 0.024 0.976 21 H -0.025 1.025 22 H 0.133 0.867 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.021 -10.490 -1.256 12.160 hybrid contribution -1.032 1.250 -0.571 1.719 sum 4.989 -9.240 -1.827 10.658 Atomic orbital electron populations 1.70109 1.07679 1.27307 1.53080 1.25862 0.95597 1.02896 0.95600 0.85482 0.79320 0.79349 0.77424 1.18468 1.20843 1.20763 1.21793 0.94252 0.90835 1.47886 0.90859 1.19327 0.89946 0.88775 0.93190 1.62269 1.33454 1.03308 1.25528 1.23300 0.92185 0.93139 0.96233 1.23602 0.99870 1.00327 0.98519 1.22702 0.97845 1.00409 0.95066 1.23026 0.97680 0.99874 0.96715 1.22991 0.94276 0.98704 0.89153 1.22913 0.95302 0.96623 1.00248 1.22804 0.99414 0.95781 0.98923 1.22862 0.96931 0.96100 0.99621 0.93148 0.97553 1.02495 0.86700 0.93046 0.91157 0.87497 0.92031 0.89855 0.92689 0.94865 0.89578 0.90436 0.89605 0.89994 0.94150 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.51 -28.99 8.01 25.60 0.21 -28.78 16 8 H 0.07 4.06 5.27 -2.92 -0.02 4.04 16 9 C 0.21 11.49 3.28 85.56 0.28 11.77 16 10 N -0.52 -22.67 4.57 -844.31 -3.86 -26.53 16 11 C 0.06 2.15 3.72 45.44 0.17 2.32 16 12 C -0.18 -6.53 7.36 31.18 0.23 -6.30 16 13 C -0.12 -3.60 8.09 31.18 0.25 -3.34 16 14 C -0.14 -4.61 7.53 31.12 0.23 -4.38 16 15 C 0.06 2.21 3.10 45.44 0.14 2.35 16 16 C -0.11 -3.25 6.91 31.18 0.22 -3.03 16 17 C -0.13 -3.66 8.09 31.18 0.25 -3.41 16 18 C -0.12 -4.50 5.80 31.12 0.18 -4.32 16 19 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 20 H 0.01 0.38 5.74 -2.39 -0.01 0.37 16 21 H -0.04 -2.55 7.01 -2.38 -0.02 -2.57 16 22 H 0.12 3.45 7.38 -2.39 -0.02 3.43 16 23 H 0.05 2.27 5.84 -2.39 -0.01 2.26 16 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.30 6.23 -2.39 -0.01 2.28 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 3.07 6.50 -2.39 -0.02 3.05 16 Total: -1.00 -64.22 269.74 2.12 -62.10 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.05 Total: 11.58 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 2.62 Total: -36.81 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.57 Total: -84.19 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.22 2.12 -62.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.394 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds