Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.39869 * 126.03594 * 269.68852 * 15 14 12 17 17 N 1.30833 * 108.20280 * 179.81964 * 16 15 14 18 18 N 1.40084 * 108.20452 * 0.43883 * 17 16 15 19 19 H 0.97001 * 126.03975 * 179.69553 * 18 17 16 20 20 C 1.34947 * 107.92303 * 359.72207 * 18 17 16 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 26 26 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 27 27 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 28 28 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 29 29 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 30 30 H 1.08003 * 125.89857 * 0.02562 * 16 15 14 31 31 H 1.08002 * 126.12499 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.8954 -1.5910 4.4153 17 7 2.7980 -1.8353 5.3303 18 7 3.8707 -0.9563 5.1327 19 1 4.6780 -0.9115 5.6686 20 6 3.5822 -0.1825 4.0654 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 1.8764 -2.6150 0.3648 26 1 1.9053 -2.5654 2.1441 27 1 0.4385 -2.0742 1.2640 28 1 1.9297 1.0872 2.3124 29 1 0.5722 -0.0344 2.5726 30 1 0.9502 -2.1020 4.3057 31 1 4.2086 0.5959 3.6554 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = 82.366582 kcal Electronic energy + Delta-G solvation = -13777.806154 eV Core-core repulsion = 11482.261958 eV Total energy + Delta-G solvation = -2295.544197 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89899 -37.02500 -32.92737 -31.28436 -30.52939 -28.24897 -26.23470 -25.09747 -23.38385 -21.61276 -19.94498 -19.05126 -17.37751 -16.04621 -15.19524 -14.48333 -14.27576 -13.88363 -13.67734 -13.38587 -12.71071 -12.28155 -12.07188 -11.50329 -11.02729 -10.98829 -10.70299 -10.62947 -10.55842 -10.24559 -9.96402 -9.73839 -9.38801 -8.85029 -8.34432 -8.21448 -7.01406 -5.96858 -4.00198 2.14391 3.05199 3.12855 3.35129 3.39147 3.42557 4.45806 5.05498 5.19089 5.33480 5.37054 5.76900 5.81670 6.04348 6.26355 6.41518 6.44152 6.61948 6.74745 6.89430 6.90978 6.98999 7.19213 7.47374 7.56599 7.78656 7.87095 7.89679 8.19632 8.46788 8.68463 9.06184 9.64691 11.10158 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056863 B = 0.007356 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.292122 B = 3805.524323 C = 3931.160376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.532 5.532 13 C 0.036 3.964 14 C 0.126 3.874 15 C -0.212 4.212 16 C 0.056 3.944 17 N -0.308 5.308 18 N -0.486 5.486 19 H 0.434 0.566 20 C 0.067 3.933 21 H 0.087 0.913 22 H 0.030 0.970 23 H 0.008 0.992 24 H 0.260 0.740 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.177 0.823 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -1.280 10.871 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.255 5.255 13 C -0.112 4.112 14 C -0.004 4.004 15 C -0.223 4.223 16 C -0.131 4.131 17 N -0.131 5.131 18 N -0.194 5.194 19 H 0.277 0.723 20 C -0.080 4.080 21 H 0.105 0.895 22 H 0.049 0.951 23 H 0.027 0.973 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.194 0.806 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.352 -1.883 11.678 12.294 hybrid contribution -0.405 0.120 -1.360 1.424 sum 2.947 -1.763 10.317 10.874 Atomic orbital electron populations 1.22405 1.00970 0.99358 1.00483 1.19307 0.89702 0.94508 0.86089 0.94378 1.21110 1.30443 1.12419 0.89753 0.92057 1.24923 0.95290 0.95150 0.98934 1.69878 1.37119 1.23107 1.23406 0.86604 0.79193 0.79631 0.82210 1.21431 1.20302 1.20413 1.62365 1.59517 1.01952 1.01673 1.22206 0.96851 0.91355 1.00804 1.20295 0.95554 0.97058 0.87450 1.20229 0.97179 1.02851 1.02065 1.23786 0.98902 0.97181 0.93241 1.77219 0.96841 1.14543 1.24497 1.46216 1.18162 1.29057 1.25989 0.72272 1.22370 0.97679 0.97840 0.90142 0.89468 0.95085 0.97307 0.93021 0.91321 0.93851 0.96558 0.91165 0.94901 0.80608 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.28 37.16 0.31 -3.84 16 2 C 0.21 5.24 2.34 -68.87 -0.16 5.08 16 3 H 0.04 1.04 8.03 -51.92 -0.42 0.62 16 4 C -0.50 -13.62 7.94 -34.44 -0.27 -13.90 16 5 H 0.06 1.69 6.75 -52.49 -0.35 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.36 4.73 -237.73 -1.13 -12.49 16 13 C 0.04 0.73 8.67 60.06 0.52 1.25 16 14 C 0.13 2.26 4.89 -4.98 -0.02 2.24 16 15 C -0.21 -3.35 4.95 -105.06 -0.52 -3.87 16 16 C 0.06 0.85 10.54 -17.37 -0.18 0.66 16 17 N -0.31 -4.68 12.70 30.62 0.39 -4.29 16 18 N -0.49 -6.11 7.36 30.44 0.22 -5.88 16 19 H 0.43 3.84 8.96 -182.61 -1.64 2.20 16 20 C 0.07 0.91 11.90 -17.23 -0.21 0.70 16 21 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 22 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 23 H 0.01 0.18 6.75 -51.93 -0.35 -0.18 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.07 1.48 6.53 -51.93 -0.34 1.15 16 26 H 0.04 0.79 6.11 -51.93 -0.32 0.47 16 27 H 0.02 0.32 6.28 -51.93 -0.33 -0.01 16 28 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 29 H 0.03 0.59 6.94 -51.93 -0.36 0.23 16 30 H 0.18 2.34 8.06 -52.48 -0.42 1.91 16 31 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -30.22 253.01 -6.87 -37.09 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.14 Total: 0.38 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.63 Total: -10.18 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.12 Total: -47.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.22 -6.87 -37.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.457 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds