Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.39869 * 126.03594 * 269.68852 * 15 14 12 17 17 N 1.30833 * 108.20280 * 179.81964 * 16 15 14 18 18 N 1.40084 * 108.20452 * 0.43883 * 17 16 15 19 19 H 0.97001 * 126.03975 * 179.69553 * 18 17 16 20 20 C 1.34947 * 107.92303 * 359.72207 * 18 17 16 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 26 26 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 27 27 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 28 28 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 29 29 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 30 30 H 1.08003 * 125.89857 * 0.02562 * 16 15 14 31 31 H 1.08002 * 126.12499 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 1.8954 -1.5910 4.4153 17 7 2.7980 -1.8353 5.3303 18 7 3.8707 -0.9563 5.1327 19 1 4.6780 -0.9115 5.6686 20 6 3.5822 -0.1825 4.0654 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 1.8764 -2.6150 0.3648 26 1 1.9053 -2.5654 2.1441 27 1 0.4385 -2.0742 1.2640 28 1 1.9297 1.0872 2.3124 29 1 0.5722 -0.0344 2.5726 30 1 0.9502 -2.1020 4.3057 31 1 4.2086 0.5959 3.6554 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = 61.037256 kcal Electronic energy + Delta-G solvation = -13778.731063 eV Core-core repulsion = 11482.261958 eV Total energy + Delta-G solvation = -2296.469105 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02137 -38.74454 -34.84715 -32.58607 -31.84919 -30.01216 -27.79171 -27.07045 -24.99410 -22.77147 -21.43405 -20.55414 -18.57056 -18.04999 -16.97796 -16.16033 -15.47738 -15.30014 -15.22150 -14.93681 -14.34228 -13.83829 -13.51269 -13.26857 -12.82290 -12.75631 -12.55874 -12.39990 -12.20827 -11.96667 -11.79756 -11.34586 -10.85446 -10.48745 -10.43954 -9.41689 -8.69908 -8.05782 -6.16131 1.05507 1.45511 1.46424 1.54032 1.86898 2.15626 2.47258 3.23121 3.71332 3.91744 4.16959 4.49583 4.62668 4.73303 4.77549 4.80178 4.88732 4.99946 5.01970 5.20577 5.26828 5.36951 5.61976 5.72557 5.78028 5.88506 6.26922 6.52640 6.57657 6.79791 6.86073 6.98900 7.53117 8.99782 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056863 B = 0.007356 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.292122 B = 3805.524323 C = 3931.160376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.010 0.990 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.273 1.273 12 N -0.540 5.540 13 C 0.045 3.955 14 C 0.133 3.867 15 C -0.240 4.240 16 C 0.051 3.949 17 N -0.328 5.328 18 N -0.471 5.471 19 H 0.451 0.549 20 C 0.082 3.918 21 H 0.059 0.941 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.189 0.811 31 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -1.779 11.607 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.107 3.893 3 H 0.028 0.972 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.199 1.199 12 N -0.263 5.263 13 C -0.103 4.103 14 C 0.004 3.996 15 C -0.252 4.252 16 C -0.135 4.135 17 N -0.151 5.151 18 N -0.181 5.181 19 H 0.298 0.702 20 C -0.067 4.067 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.205 0.795 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.134 -2.396 12.453 13.338 hybrid contribution -0.597 0.304 -1.505 1.647 sum 3.537 -2.092 10.948 11.693 Atomic orbital electron populations 1.22208 1.00468 0.99121 1.00074 1.19065 0.89944 0.93063 0.87184 0.97219 1.21390 1.30457 1.12373 0.91092 0.92747 1.25651 0.95485 0.95823 1.01674 1.70004 1.37926 1.24189 1.23949 0.85655 0.78692 0.78663 0.78850 1.21033 1.19896 1.19881 1.62268 1.59743 1.02504 1.01804 1.22114 0.96834 0.90591 1.00792 1.20206 0.95868 0.96780 0.86764 1.20084 0.98475 1.04379 1.02226 1.23995 0.99467 0.97049 0.93011 1.77189 0.97532 1.15507 1.24881 1.46242 1.18233 1.27950 1.25655 0.70222 1.22736 0.97016 0.97487 0.89468 0.92183 0.95088 0.95293 0.93043 0.93343 0.91753 0.96459 0.91296 0.94979 0.79452 0.78264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 8.28 71.98 0.60 -7.06 16 2 C 0.21 10.76 2.34 44.17 0.10 10.86 16 3 H 0.01 0.55 8.03 -2.38 -0.02 0.53 16 4 C -0.51 -28.26 7.94 25.60 0.20 -28.06 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -52.73 11.32 21.45 0.24 -52.49 16 8 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 N -0.54 -22.70 4.73 -906.03 -4.29 -26.99 16 13 C 0.05 1.77 8.67 127.69 1.11 2.88 16 14 C 0.13 4.61 4.89 85.56 0.42 5.03 16 15 C -0.24 -7.12 4.95 -20.15 -0.10 -7.22 16 16 C 0.05 1.45 10.54 85.24 0.90 2.35 16 17 N -0.33 -9.21 12.70 -57.02 -0.72 -9.93 16 18 N -0.47 -10.52 7.36 -57.59 -0.42 -10.94 16 19 H 0.45 6.61 8.96 -213.33 -1.91 4.69 16 20 C 0.08 1.99 11.90 83.54 0.99 2.99 16 21 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 22 H 0.03 1.44 6.38 -2.39 -0.02 1.42 16 23 H 0.03 1.22 6.75 -2.39 -0.02 1.21 16 24 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 25 H 0.05 2.07 6.53 -2.39 -0.02 2.06 16 26 H 0.06 2.23 6.11 -2.39 -0.01 2.22 16 27 H 0.02 0.66 6.28 -2.39 -0.01 0.65 16 28 H 0.07 2.38 8.00 -2.38 -0.02 2.36 16 29 H 0.03 1.12 6.94 -2.39 -0.02 1.10 16 30 H 0.19 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -63.36 253.01 0.73 -62.63 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -0.77 Total: 9.08 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.67 Total: -17.13 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.19 Total: -100.36 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.36 0.73 -62.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.667 kcal (2) G-P(sol) polarization free energy of solvation -63.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds