Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 C 1.39878 * 126.03958 * 269.69375 * 15 14 12 17 17 N 1.30834 * 108.20031 * 179.81562 * 16 15 14 18 18 N 1.40084 * 108.20859 * 0.43735 * 17 16 15 19 19 H 0.96998 * 126.04497 * 179.69983 * 18 17 16 20 20 C 1.34949 * 107.92529 * 359.71731 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 26 26 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 27 27 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 28 28 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 29 29 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 30 30 H 1.07993 * 125.89652 * 359.97438 * 16 15 14 31 31 H 1.08002 * 126.13106 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 6 3.7738 -0.2030 -4.0008 17 7 4.0548 -0.9426 -5.0428 18 7 2.9407 -1.7440 -5.3240 19 1 2.8678 -2.3867 -6.0468 20 6 1.9865 -1.4636 -4.4118 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 0.3489 -1.9549 -1.3693 26 1 1.8133 -2.5258 -2.2044 27 1 1.7058 -2.6222 -0.4302 28 1 0.6814 0.1052 -2.6087 29 1 2.1025 1.1188 -2.2604 30 1 4.4304 0.5221 -3.5434 31 1 1.0068 -1.9147 -4.3559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402215.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = 91.726008 kcal Electronic energy + Delta-G solvation = -13827.881643 eV Core-core repulsion = 11532.743302 eV Total energy + Delta-G solvation = -2295.138341 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97625 -37.31559 -32.88162 -31.46583 -30.80132 -28.91920 -26.48956 -25.21867 -23.30209 -21.75614 -19.98039 -19.18318 -17.47220 -16.54358 -15.32985 -14.67759 -14.37624 -13.96218 -13.88879 -13.36055 -13.04385 -12.54713 -12.23457 -12.10792 -11.47852 -11.22671 -11.01671 -10.85798 -10.36481 -10.22504 -9.98031 -9.51631 -9.43666 -9.02595 -8.55598 -8.31196 -7.22477 -6.02597 -4.00104 2.05246 3.00020 3.06280 3.27850 3.38241 3.40875 4.42801 4.95495 5.05247 5.15813 5.30610 5.49734 5.73949 6.00175 6.08927 6.15698 6.24201 6.30581 6.32160 6.45695 6.57993 6.76385 6.83178 6.92155 7.23926 7.39221 7.68812 7.82375 8.01598 8.15340 8.72089 9.06468 9.59856 11.10755 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.059175 B = 0.007748 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.061953 B = 3612.844176 C = 3675.323712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.180 3.820 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.034 3.966 14 C 0.123 3.877 15 C -0.210 4.210 16 C 0.070 3.930 17 N -0.306 5.306 18 N -0.485 5.485 19 H 0.434 0.566 20 C 0.053 3.947 21 H 0.028 0.972 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.263 0.737 25 H 0.016 0.984 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.183 0.817 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 0.368 -14.565 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.242 5.242 13 C -0.115 4.115 14 C -0.006 4.006 15 C -0.222 4.222 16 C -0.117 4.117 17 N -0.129 5.129 18 N -0.193 5.193 19 H 0.277 0.723 20 C -0.095 4.095 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.200 0.800 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.646 0.041 -15.167 15.256 hybrid contribution -2.279 0.679 0.503 2.431 sum -3.926 0.720 -14.664 15.198 Atomic orbital electron populations 1.22832 1.01857 1.01015 0.98829 1.19798 0.88597 0.95283 0.89058 0.94279 1.20961 1.31263 1.13694 0.87795 0.90070 1.24926 0.95965 0.96600 0.95845 1.69887 1.45920 1.40386 0.97836 0.86884 0.80476 0.83997 0.76918 1.20902 1.22494 1.19291 1.62154 1.58612 1.02319 1.01087 1.22276 0.95850 0.91858 1.01492 1.20366 0.95682 0.96856 0.87690 1.20164 0.96586 1.03936 1.01469 1.23816 0.95848 0.98534 0.93525 1.77267 1.07623 1.08564 1.19449 1.46212 1.11302 1.34958 1.26821 0.72267 1.22349 0.95696 0.99254 0.92159 0.95307 0.93802 0.92457 0.92713 0.96584 0.93590 0.90647 0.95203 0.90683 0.80030 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.99 7.92 37.16 0.29 -3.69 16 2 C 0.18 4.20 1.90 -68.86 -0.13 4.07 16 3 H 0.04 0.94 6.99 -51.93 -0.36 0.58 16 4 C -0.50 -13.91 8.55 -34.44 -0.29 -14.20 16 5 H 0.08 2.49 7.35 -52.49 -0.39 2.11 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 8 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 9 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.52 -10.57 4.69 -237.73 -1.12 -11.69 16 13 C 0.03 0.63 8.58 60.06 0.52 1.15 16 14 C 0.12 2.05 5.02 -4.98 -0.02 2.03 16 15 C -0.21 -3.14 5.00 -105.05 -0.52 -3.67 16 16 C 0.07 1.04 11.96 -17.36 -0.21 0.84 16 17 N -0.31 -4.56 12.70 30.62 0.39 -4.17 16 18 N -0.48 -5.78 7.36 30.45 0.22 -5.56 16 19 H 0.43 3.58 8.96 -182.61 -1.64 1.94 16 20 C 0.05 0.66 10.42 -17.22 -0.18 0.48 16 21 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 22 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 23 H 0.06 1.20 6.33 -51.93 -0.33 0.87 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.28 6.21 -51.92 -0.32 -0.04 16 26 H 0.05 0.76 6.10 -51.93 -0.32 0.44 16 27 H 0.07 1.60 6.86 -51.93 -0.36 1.25 16 28 H 0.03 0.47 7.06 -51.93 -0.37 0.11 16 29 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 246.77 15.07 3.72 3.72 Total: -1.00 -31.90 246.77 -5.85 -37.74 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.04 Total: 0.19 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.65 Total: -11.15 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.27 Total: -48.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.90 -5.85 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402215.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.471 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds