Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46894 * 111.00124 * 306.04840 * 12 2 1 14 14 C 1.46901 * 110.99644 * 70.00221 * 12 2 1 15 15 C 1.50700 * 109.47327 * 169.99950 * 14 12 2 16 16 C 1.39878 * 126.03958 * 269.69375 * 15 14 12 17 17 N 1.30834 * 108.20031 * 179.81562 * 16 15 14 18 18 N 1.40084 * 108.20859 * 0.43735 * 17 16 15 19 19 H 0.96998 * 126.04497 * 179.69983 * 18 17 16 20 20 C 1.34949 * 107.92529 * 359.71731 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 1.09007 * 109.47149 * 60.00173 * 13 12 2 26 26 H 1.09002 * 109.47016 * 179.97438 * 13 12 2 27 27 H 1.08993 * 109.47669 * 299.99609 * 13 12 2 28 28 H 1.08997 * 109.47179 * 289.99729 * 14 12 2 29 29 H 1.09000 * 109.47307 * 50.00140 * 14 12 2 30 30 H 1.07993 * 125.89652 * 359.97438 * 16 15 14 31 31 H 1.08002 * 126.13106 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 6 2.4773 -0.5164 -3.5794 16 6 3.7738 -0.2030 -4.0008 17 7 4.0548 -0.9426 -5.0428 18 7 2.9407 -1.7440 -5.3240 19 1 2.8678 -2.3867 -6.0468 20 6 1.9865 -1.4636 -4.4118 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 0.3489 -1.9549 -1.3693 26 1 1.8133 -2.5258 -2.2044 27 1 1.7058 -2.6222 -0.4302 28 1 0.6814 0.1052 -2.6087 29 1 2.1025 1.1188 -2.2604 30 1 4.4304 0.5221 -3.5434 31 1 1.0068 -1.9147 -4.3559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402215.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = 66.785610 kcal Electronic energy + Delta-G solvation = -13828.963140 eV Core-core repulsion = 11532.743302 eV Total energy + Delta-G solvation = -2296.219838 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.02976 -38.91817 -34.80936 -32.85441 -32.08486 -30.42338 -27.86222 -27.15780 -24.87245 -22.82375 -21.37284 -20.63727 -18.69321 -18.42818 -17.08292 -16.26909 -15.67734 -15.24671 -15.23559 -14.91481 -14.63891 -14.06440 -13.76728 -13.65656 -13.08864 -12.92379 -12.67754 -12.34772 -12.00880 -11.80583 -11.49020 -11.38125 -11.03043 -10.71078 -10.48505 -9.43398 -8.74444 -8.22628 -6.24757 1.03937 1.33696 1.40096 1.50205 1.87809 2.16024 2.36927 3.12224 3.56916 3.98668 4.13433 4.30682 4.50260 4.55652 4.64995 4.73208 4.75337 4.83705 4.96257 4.98918 5.06849 5.29582 5.30422 5.52160 5.70744 5.73542 6.13448 6.52659 6.54496 6.79444 6.81466 6.84588 7.40174 8.94684 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.059175 B = 0.007748 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.061953 B = 3612.844176 C = 3675.323712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.500 4.500 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.954 5.954 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.302 1.302 11 H -0.245 1.245 12 N -0.540 5.540 13 C 0.042 3.958 14 C 0.130 3.870 15 C -0.239 4.239 16 C 0.056 3.944 17 N -0.332 5.332 18 N -0.471 5.471 19 H 0.451 0.549 20 C 0.074 3.926 21 H 0.064 0.936 22 H 0.034 0.966 23 H 0.055 0.945 24 H 0.264 0.736 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.187 0.813 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 1.200 -16.700 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.075 3.925 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.052 0.948 6 C -0.189 4.189 7 N -0.595 5.595 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.230 1.230 11 H -0.169 1.169 12 N -0.263 5.263 13 C -0.106 4.106 14 C 0.002 3.998 15 C -0.251 4.251 16 C -0.130 4.130 17 N -0.156 5.156 18 N -0.181 5.181 19 H 0.297 0.703 20 C -0.076 4.076 21 H 0.083 0.917 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.204 0.796 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.465 0.861 -17.362 17.725 hybrid contribution -1.631 0.297 1.073 1.975 sum -5.096 1.158 -16.289 17.107 Atomic orbital electron populations 1.22691 0.99772 1.01421 1.00046 1.19575 0.90072 0.94389 0.88452 0.94725 1.21238 1.30068 1.12322 0.90221 0.94783 1.25807 0.97636 1.00073 0.95353 1.70056 1.48188 1.42718 0.98525 0.85812 0.78874 0.80071 0.77308 1.19493 1.22978 1.16865 1.62015 1.59444 1.03143 1.01731 1.22165 0.96790 0.90912 1.00773 1.20313 0.96910 0.96280 0.86348 1.20109 0.96933 1.05891 1.02144 1.24020 0.96327 0.98880 0.93762 1.77227 1.09048 1.09440 1.19849 1.46260 1.10426 1.34407 1.26974 0.70256 1.22798 0.96532 0.97559 0.90667 0.91686 0.94786 0.92552 0.92727 0.94970 0.91208 0.94468 0.93442 0.90819 0.79609 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.16 7.92 71.98 0.57 -6.59 16 2 C 0.18 8.33 1.90 44.17 0.08 8.41 16 3 H 0.03 1.61 6.99 -2.39 -0.02 1.59 16 4 C -0.50 -28.50 8.55 25.60 0.22 -28.28 16 5 H 0.03 2.20 7.35 -2.91 -0.02 2.18 16 6 C 0.01 0.44 5.45 84.66 0.46 0.90 16 7 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 8 Si 0.95 44.61 24.37 68.60 1.67 46.28 16 9 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 11 H -0.24 -10.48 6.53 99.48 0.65 -9.83 16 12 N -0.54 -21.26 4.69 -906.05 -4.25 -25.51 16 13 C 0.04 1.51 8.58 127.69 1.10 2.61 16 14 C 0.13 3.95 5.02 85.56 0.43 4.38 16 15 C -0.24 -6.53 5.00 -20.14 -0.10 -6.63 16 16 C 0.06 1.60 11.96 85.24 1.02 2.62 16 17 N -0.33 -9.29 12.70 -57.02 -0.72 -10.01 16 18 N -0.47 -9.78 7.36 -57.59 -0.42 -10.21 16 19 H 0.45 5.94 8.96 -213.33 -1.91 4.02 16 20 C 0.07 1.55 10.42 83.54 0.87 2.42 16 21 H 0.06 2.10 6.91 -2.39 -0.02 2.09 16 22 H 0.03 1.41 3.27 -2.39 -0.01 1.40 16 23 H 0.06 2.22 6.33 -2.38 -0.02 2.20 16 24 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 25 H 0.03 1.05 6.21 -2.38 -0.01 1.03 16 26 H 0.07 2.14 6.10 -2.39 -0.01 2.13 16 27 H 0.04 1.60 6.86 -2.39 -0.02 1.59 16 28 H 0.05 1.28 7.06 -2.39 -0.02 1.27 16 29 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 30 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 31 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -70.32 246.77 0.37 -69.95 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -0.85 Total: 9.53 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.65 Total: -20.16 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.10 Total: -105.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.67 Total: 46.28 kcal Total: -70.32 0.37 -69.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402215.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.738 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds