Wall clock time and date at job start Sun Mar 29 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46855 * 90.00279 * 8 6 4 10 10 H 1.48499 * 109.47326 * 210.00609 * 8 6 4 11 11 H 1.48497 * 109.46885 * 330.00481 * 8 6 4 12 12 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 13 13 O 1.21615 * 119.99846 * 180.27645 * 12 2 1 14 14 C 1.47096 * 120.00186 * 0.28050 * 12 2 1 15 15 C 1.32988 * 120.00460 * 179.97438 * 14 12 2 16 16 C 1.51406 * 136.31445 * 359.63581 * 15 14 12 17 17 C 1.53379 * 87.51877 * 206.05010 * 16 15 14 18 18 C 1.51405 * 136.31939 * 179.97438 * 15 14 12 19 19 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 20 20 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 21 21 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 22 22 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 23 23 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 24 24 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.99772 * 359.97438 * 14 12 2 26 26 H 1.09003 * 113.56266 * 320.63465 * 16 15 14 27 27 H 1.09001 * 113.56341 * 91.36428 * 16 15 14 28 28 H 1.08998 * 113.96739 * 220.28423 * 17 16 15 29 29 H 1.08999 * 113.59318 * 88.79136 * 17 16 15 30 30 H 1.09000 * 113.56280 * 268.62950 * 18 15 14 31 31 H 1.09000 * 113.56131 * 39.37041 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 1 2.1068 1.0906 -2.2417 6 6 3.1331 2.8738 -1.6729 7 7 3.5563 3.6164 -0.6732 8 14 3.4525 3.4083 -3.4340 9 1 2.3244 4.2495 -3.9082 10 1 4.7128 4.1915 -3.4928 11 1 3.5742 2.2089 -4.3010 12 6 2.1388 -1.1672 0.0057 13 8 3.3550 -1.1672 0.0108 14 6 1.4034 -2.4411 0.0058 15 6 2.0682 -3.5928 0.0109 16 6 3.5213 -4.0183 0.0108 17 6 3.0696 -5.3245 -0.6543 18 6 1.7100 -5.0639 0.0133 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3634 -0.8898 0.5139 21 1 -0.3633 0.8901 0.5138 22 1 1.6063 2.0296 0.5094 23 1 3.1478 1.1396 0.5181 24 1 4.0339 4.4418 -0.8505 25 1 0.3234 -2.4411 0.0016 26 1 4.1555 -3.4028 -0.6273 27 1 3.9344 -4.1581 1.0098 28 1 3.5809 -6.2115 -0.2804 29 1 3.0429 -5.2733 -1.7427 30 1 1.6267 -5.4905 1.0129 31 1 0.8587 -5.3061 -0.6228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379413764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:56 Heat of formation + Delta-G solvation = 5.594948 kcal Electronic energy + Delta-G solvation = -13484.243825 eV Core-core repulsion = 11153.077809 eV Total energy + Delta-G solvation = -2331.166015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.22816 -37.90054 -34.66531 -32.59421 -30.56695 -27.66237 -25.73842 -25.61447 -23.68228 -22.03816 -19.14819 -17.34130 -16.49448 -16.37210 -15.44773 -15.30374 -14.52431 -14.20078 -13.70973 -12.89455 -12.39752 -12.31600 -12.06972 -11.96005 -11.77150 -11.42182 -11.17101 -10.85830 -10.80777 -10.49881 -10.28963 -10.09708 -9.58717 -8.85779 -8.76368 -8.39504 -7.53740 -6.00101 -4.04510 1.80890 3.32681 3.38909 3.44004 3.97583 4.11838 4.47592 4.60040 4.67716 4.90752 5.17425 5.32082 5.40848 5.57993 5.70969 5.76074 5.78652 5.90824 6.03483 6.19063 6.26900 6.32581 6.49070 6.86969 7.17675 7.50124 7.62569 7.97039 8.28725 8.51776 8.95729 9.20445 9.60418 11.07928 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.041806 B = 0.007471 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.603053 B = 3746.681494 C = 4018.512487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.601 5.601 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.538 3.462 13 O -0.542 6.542 14 C -0.186 4.186 15 C -0.083 4.083 16 C -0.104 4.104 17 C -0.143 4.143 18 C -0.106 4.106 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.263 0.737 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -13.962 1.734 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.332 5.332 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.326 3.674 13 O -0.422 6.422 14 C -0.207 4.207 15 C -0.085 4.085 16 C -0.140 4.140 17 C -0.180 4.180 18 C -0.143 4.143 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.146 0.854 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.521 -13.744 1.779 14.918 hybrid contribution -0.058 0.515 -1.032 1.155 sum -5.579 -13.229 0.747 14.377 Atomic orbital electron populations 1.21641 0.81537 1.01529 1.01087 1.48045 1.06131 1.07810 1.71234 1.19297 0.92590 0.78064 0.97468 1.21452 1.36267 1.06171 0.92377 0.92512 1.24941 0.95420 0.96407 0.97436 1.69938 1.38632 1.14292 1.30691 0.86493 0.77663 0.78547 0.84703 1.20644 1.21075 1.19924 1.18245 0.87370 0.83782 0.77961 1.90725 1.13586 1.87394 1.50484 1.21969 0.99570 0.91674 1.07440 1.23309 0.98056 0.93722 0.93430 1.22149 0.94684 0.95550 1.01657 1.22721 0.96704 0.98202 1.00368 1.22293 0.98285 0.92323 1.01386 0.93322 0.92438 0.91522 0.95034 0.93822 0.92761 0.85416 0.89448 0.88899 0.90826 0.89930 0.88652 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.20 59.85 0.61 2.06 16 2 N -0.60 -13.56 2.86 -184.36 -0.53 -14.09 16 3 C 0.25 6.68 5.21 -5.19 -0.03 6.66 16 4 C -0.52 -15.41 9.39 -34.44 -0.32 -15.73 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.54 12.06 7.62 -12.67 -0.10 11.97 16 13 O -0.54 -14.28 14.73 5.26 0.08 -14.20 16 14 C -0.19 -3.15 9.21 -37.81 -0.35 -3.50 16 15 C -0.08 -1.26 6.93 -100.48 -0.70 -1.96 16 16 C -0.10 -1.52 6.99 -27.56 -0.19 -1.72 16 17 C -0.14 -1.58 8.17 -26.18 -0.21 -1.79 16 18 C -0.11 -1.15 7.96 -27.40 -0.22 -1.37 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.06 0.76 6.09 -51.93 -0.32 0.45 16 21 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 22 H 0.03 0.86 7.89 -51.93 -0.41 0.45 16 23 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.13 1.75 6.23 -52.49 -0.33 1.43 16 26 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -33.73 266.84 -6.63 -40.36 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.32 Total: -3.21 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.60 Total: -3.73 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.21 Total: -40.60 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.73 -6.63 -40.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.959 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds