Wall clock time and date at job start Sun Mar 29 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 N 1.46899 * 109.47086 * 260.02195 * 8 7 6 10 10 C 1.46902 * 111.00273 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47007 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46803 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99771 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00210 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99931 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46893 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47091 * 120.00165 * 16 14 12 19 19 H 1.48503 * 109.46934 * 239.99961 * 16 14 12 20 20 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 21 21 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 22 22 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 23 23 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 24 24 H 1.09003 * 109.46999 * 20.02358 * 8 7 6 25 25 H 1.09000 * 109.46941 * 140.02609 * 8 7 6 26 26 H 1.00895 * 111.00134 * 303.95640 * 9 8 7 27 27 H 1.08999 * 109.47049 * 300.00624 * 10 9 8 28 28 H 1.09002 * 109.46892 * 60.00226 * 10 9 8 29 29 H 1.08995 * 109.47128 * 299.99935 * 11 10 9 30 30 H 1.08995 * 109.47565 * 60.00482 * 11 10 9 31 31 H 0.96994 * 120.00024 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 7 1.4801 -2.9648 -1.3475 10 6 1.0189 -4.3592 -1.3783 11 6 0.6338 -4.7375 -2.8099 12 6 0.1601 -6.1678 -2.8413 13 1 0.1365 -6.7489 -1.9312 14 6 -0.2432 -6.7344 -4.0317 15 7 -0.2149 -6.0266 -5.1399 16 14 -0.8310 -8.5071 -4.0706 17 1 -0.7678 -9.0797 -2.7019 18 1 -2.2312 -8.5536 -4.5630 19 1 0.0392 -9.2974 -4.9780 20 1 -0.3635 0.0055 1.0275 21 1 -0.3633 0.8872 -0.5187 22 1 -0.3634 -0.8927 -0.5092 23 1 4.4891 -1.3486 0.0077 24 1 2.6651 -3.2085 0.3701 25 1 0.9983 -2.6631 0.6749 26 1 0.7800 -2.3436 -1.7243 27 1 1.8185 -5.0141 -1.0323 28 1 0.1516 -4.4694 -0.7272 29 1 -0.1657 -4.0826 -3.1562 30 1 1.5012 -4.6273 -3.4606 31 1 -0.4982 -6.4254 -5.9774 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388200028.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:18 Heat of formation + Delta-G solvation = 33.519209 kcal Electronic energy + Delta-G solvation = -13062.087563 eV Core-core repulsion = 10764.425186 eV Total energy + Delta-G solvation = -2297.662378 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.13283 -37.48551 -35.12481 -33.77477 -32.41267 -30.23256 -28.81544 -26.73658 -24.64346 -22.43627 -21.83299 -20.37825 -18.64933 -18.40262 -16.75205 -16.39469 -16.00961 -15.16630 -15.09052 -14.89359 -14.21613 -14.04606 -13.64023 -13.42413 -13.36979 -13.01285 -12.80293 -12.79332 -12.36994 -11.88281 -11.47122 -11.34365 -11.20666 -10.54015 -10.28395 -9.53721 -9.09430 -8.17175 -6.28568 0.98525 1.43149 1.43482 1.56956 1.73478 2.07484 2.43778 3.16521 3.62628 3.81351 3.96935 4.36639 4.42502 4.53019 4.66313 4.71021 4.77864 4.82594 5.02677 5.05095 5.13756 5.25305 5.49534 5.71719 5.73060 5.83446 6.20001 6.36838 6.49881 6.60375 6.76270 6.89841 7.40973 8.95320 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.065595 B = 0.005185 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.756590 B = 5398.590101 C = 5473.809421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.072 3.928 3 N -0.332 5.332 4 N -0.472 5.472 5 H 0.452 0.548 6 C 0.086 3.914 7 C -0.254 4.254 8 C 0.141 3.859 9 N -0.694 5.694 10 C 0.084 3.916 11 C 0.030 3.970 12 C -0.541 4.541 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.208 0.792 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.334 0.666 27 H 0.062 0.938 28 H 0.021 0.979 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 9.965 12.172 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.157 5.157 4 N -0.181 5.181 5 H 0.299 0.701 6 C -0.063 4.063 7 C -0.265 4.265 8 C 0.012 3.988 9 N -0.325 5.325 10 C -0.045 4.045 11 C -0.007 4.007 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.109 0.891 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.225 0.775 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.151 0.849 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.464 11.063 11.829 17.438 hybrid contribution -0.713 -1.223 -0.142 1.423 sum 5.751 9.840 11.686 16.324 Atomic orbital electron populations 1.20251 0.85921 1.03469 1.03789 1.22609 0.97903 0.90478 0.98505 1.77162 0.88025 1.23235 1.27298 1.46180 1.06986 1.05835 1.59098 0.70116 1.22869 0.99827 0.85262 0.98364 1.20075 0.92969 0.95666 1.17813 1.20083 0.99424 0.90541 0.88801 1.60587 1.46698 1.03297 1.21943 1.21788 0.97131 0.88485 0.97113 1.18939 0.94490 0.94845 0.92474 1.21672 1.43273 0.98561 0.94484 0.91922 1.25987 0.95822 1.02805 0.95216 1.70126 1.49030 1.38682 0.99613 0.85365 0.77816 0.79017 0.78619 1.18376 1.20433 1.20473 0.89115 0.90410 0.90843 0.77496 0.89970 0.94587 0.84867 0.91997 0.96094 0.99246 0.98923 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.26 71.23 0.73 -0.98 16 2 C 0.07 1.94 7.22 43.10 0.31 2.25 16 3 N -0.33 -9.09 12.70 -47.39 -0.60 -9.69 16 4 N -0.47 -9.75 7.36 -57.59 -0.42 -10.18 16 5 H 0.45 5.91 8.96 -213.33 -1.91 4.00 16 6 C 0.09 1.81 11.90 83.54 0.99 2.80 16 7 C -0.25 -6.68 5.61 -20.14 -0.11 -6.79 16 8 C 0.14 3.95 5.79 85.56 0.50 4.45 16 9 N -0.69 -24.84 6.49 -517.94 -3.36 -28.20 16 10 C 0.08 3.49 5.62 86.30 0.49 3.98 16 11 C 0.03 1.62 5.23 29.85 0.16 1.77 16 12 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 16 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.07 1.71 7.25 -2.38 -0.02 1.70 16 23 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.33 12.08 8.01 -89.70 -0.72 11.36 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.85 270.36 0.18 -69.67 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -1.50 Total: 12.24 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.76 Total: -22.85 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.10 Total: -105.38 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.85 0.18 -69.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388200028.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.188 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds