Wall clock time and date at job start Sun Mar 29 2020 21:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47088 * 30.00257 * 3 2 1 6 6 H 1.48507 * 109.46833 * 149.99876 * 3 2 1 7 7 C 1.37882 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99943 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99803 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47301 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.43530 * 52.64794 * 14 13 11 16 16 C 1.51102 * 110.38979 * 290.30642 * 14 13 11 17 17 C 1.30526 * 111.10814 * 224.75168 * 16 14 13 18 18 C 1.51103 * 111.10016 * 359.97438 * 17 16 14 19 19 C 1.54632 * 110.39075 * 174.99956 * 14 13 11 20 20 H 0.96993 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47384 * 59.99694 * 9 7 2 22 22 H 1.09004 * 109.46886 * 300.00058 * 9 7 2 23 23 H 0.96997 * 119.99511 * 359.97438 * 10 9 7 24 24 H 1.09001 * 109.47499 * 60.00199 * 13 11 10 25 25 H 1.08996 * 109.47477 * 299.99615 * 13 11 10 26 26 H 1.07999 * 124.44781 * 44.72146 * 16 14 13 27 27 H 1.07990 * 124.45277 * 179.97438 * 17 16 14 28 28 H 1.09002 * 110.39081 * 257.62940 * 18 17 16 29 29 H 1.09004 * 110.48226 * 135.29835 * 18 17 16 30 30 H 1.08995 * 111.03420 * 25.41008 * 19 14 13 31 31 H 1.08998 * 111.03825 * 261.47955 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 1.7538 -4.8834 -0.0019 12 8 0.5615 -5.1050 -0.0019 13 6 2.7331 -6.0288 -0.0022 14 6 1.9682 -7.3539 -0.0020 15 1 1.2409 -7.3736 -0.8137 16 6 1.2797 -7.5641 1.3266 17 6 1.4472 -8.7857 1.7547 18 6 2.2747 -9.5941 0.7827 19 6 2.9493 -8.5423 -0.1286 20 1 -0.4850 0.8399 -0.0004 21 1 0.6247 -2.5564 -0.8919 22 1 0.6240 -2.5575 0.8880 23 1 3.1567 -3.4354 -0.0010 24 1 3.3598 -5.9714 0.8878 25 1 3.3597 -5.9709 -0.8921 26 1 0.7226 -6.8032 1.8531 27 1 1.0469 -9.1684 2.6818 28 1 1.6348 -10.2521 0.1947 29 1 3.0287 -10.1746 1.3144 30 1 3.9374 -8.2756 0.2460 31 1 3.0053 -8.8954 -1.1583 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388248197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:25 Heat of formation + Delta-G solvation = -61.225508 kcal Electronic energy + Delta-G solvation = -13218.128648 eV Core-core repulsion = 10884.065080 eV Total energy + Delta-G solvation = -2334.063568 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82910 -39.08931 -36.11358 -34.35068 -32.50062 -29.80218 -29.33970 -26.41881 -24.31868 -21.53336 -21.18930 -19.68002 -18.80364 -17.50760 -17.11557 -16.72366 -16.38678 -16.04211 -15.47279 -14.56267 -14.33079 -13.99718 -13.43564 -13.01332 -12.84072 -12.72951 -12.70805 -12.63795 -12.23370 -12.04195 -11.95363 -11.65860 -11.48639 -10.81008 -10.65093 -9.81109 -9.76349 -8.30165 -6.47244 1.40460 1.42485 1.45233 1.56528 1.83223 2.33044 2.65565 3.04624 3.71910 3.77057 4.03317 4.12947 4.39818 4.60047 4.61785 4.70817 4.79284 5.00623 5.02038 5.10703 5.16065 5.22963 5.34280 5.45854 5.50433 5.68061 5.74325 5.84744 6.00838 6.64569 6.95024 7.22803 7.54464 8.82285 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.084137 B = 0.005469 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.709724 B = 5118.871826 C = 5279.201802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.265 3.735 10 N -0.712 5.712 11 C 0.490 3.510 12 O -0.602 6.602 13 C -0.118 4.118 14 C -0.057 4.057 15 H 0.064 0.936 16 C -0.173 4.173 17 C -0.170 4.170 18 C -0.097 4.097 19 C -0.112 4.112 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.016 1.016 23 H 0.408 0.592 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.509 -15.101 0.754 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.362 5.362 11 C 0.278 3.722 12 O -0.484 6.484 13 C -0.158 4.158 14 C -0.075 4.075 15 H 0.082 0.918 16 C -0.192 4.192 17 C -0.188 4.188 18 C -0.134 4.134 19 C -0.150 4.150 20 H 0.078 0.922 21 H 0.003 0.997 22 H 0.002 0.998 23 H 0.244 0.756 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.529 -15.133 0.749 17.899 hybrid contribution -0.263 1.327 0.122 1.359 sum 9.266 -13.806 0.871 16.650 Atomic orbital electron populations 1.70144 1.08377 1.28591 1.50041 1.26105 0.95774 1.04032 0.93785 0.85129 0.78473 0.76787 0.78651 1.19503 1.20957 1.17833 1.21640 0.94332 0.90602 1.52870 0.89752 1.18514 0.88818 0.84667 0.93798 1.46263 1.11089 1.05737 1.73072 1.21706 0.90162 0.85110 0.75224 1.90626 1.19697 1.85589 1.52510 1.21752 0.97151 0.90579 1.06297 1.20843 0.96702 0.94121 0.95868 0.91811 1.23250 1.00686 0.97837 0.97378 1.23535 1.00225 0.95140 0.99892 1.21394 0.98430 0.97619 0.95924 1.22574 0.98237 0.93083 1.01063 0.92248 0.99723 0.99841 0.75606 0.86948 0.86065 0.89215 0.85088 0.90222 0.89202 0.89132 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.56 -30.82 9.28 25.60 0.24 -30.58 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 14.97 5.43 85.63 0.46 15.43 16 10 N -0.71 -30.82 5.55 -466.79 -2.59 -33.40 16 11 C 0.49 20.01 7.63 87.66 0.67 20.68 16 12 O -0.60 -30.60 14.92 -3.02 -0.05 -30.64 16 13 C -0.12 -3.15 5.09 29.85 0.15 -3.00 16 14 C -0.06 -1.51 2.52 -10.86 -0.03 -1.54 16 15 H 0.06 2.00 7.90 -2.39 -0.02 1.98 16 16 C -0.17 -5.13 9.26 26.26 0.24 -4.89 16 17 C -0.17 -3.89 10.78 26.26 0.28 -3.61 16 18 C -0.10 -1.66 6.81 30.54 0.21 -1.45 16 19 C -0.11 -1.95 6.71 31.71 0.21 -1.74 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 22 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 23 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 24 H 0.11 2.51 8.13 -2.39 -0.02 2.49 16 25 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.09 3.25 7.58 -2.91 -0.02 3.23 16 27 H 0.13 2.60 8.06 -2.92 -0.02 2.58 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.28 7.91 -2.39 -0.02 1.26 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.78 266.24 2.92 -69.86 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.34 Total: 16.53 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 2.90 Total: -10.09 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.30 Total: -90.36 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.78 2.92 -69.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388248197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.639 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds