Wall clock time and date at job start Sun Mar 29 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 N 1.30503 * 125.64811 * 274.68817 * 14 13 12 16 16 C 1.34130 * 109.25782 * 179.89378 * 15 14 13 17 17 C 1.34665 * 108.01781 * 0.37123 * 16 15 14 18 18 N 1.35039 * 125.65362 * 94.99989 * 14 13 12 19 19 H 0.97003 * 126.39585 * 359.97438 * 18 14 13 20 20 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 22 22 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 23 23 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 24 24 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 25 25 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 26 26 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 27 27 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 28 28 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 29 29 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 30 30 H 1.07996 * 125.99012 * 180.18873 * 16 15 14 31 31 H 1.08004 * 126.59060 * 179.80904 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 6 7.9738 -5.4946 -0.0017 15 7 8.1252 -6.2461 1.0544 16 6 8.5489 -7.4611 0.6758 17 6 8.6723 -7.4600 -0.6652 18 7 8.3076 -6.2128 -1.0955 19 1 8.2921 -5.9027 -2.0145 20 1 -0.4850 0.8401 -0.0004 21 1 3.8746 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 3.6584 -3.1502 -0.8903 24 1 3.6578 -3.1506 0.8896 25 1 5.9149 -2.1230 0.8899 26 1 5.9148 -2.1228 -0.8900 27 1 5.6656 -4.5375 -0.7825 28 1 7.8868 -3.5564 -0.8899 29 1 7.8861 -3.5576 0.8901 30 1 8.7576 -8.2933 1.3317 31 1 8.9963 -8.2849 -1.2825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388253632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:49 Heat of formation + Delta-G solvation = 46.395667 kcal Electronic energy + Delta-G solvation = -12809.780211 eV Core-core repulsion = 10512.676198 eV Total energy + Delta-G solvation = -2297.104012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.12046 -36.61880 -33.66235 -32.59773 -31.78125 -29.82494 -27.06884 -24.68014 -22.08434 -21.67089 -20.79538 -20.06147 -18.05049 -16.69767 -15.80711 -15.41883 -14.52910 -14.29827 -14.23992 -13.83115 -13.73111 -13.15832 -12.58432 -12.25156 -11.79691 -11.72157 -10.95063 -10.78139 -10.16381 -10.08371 -9.95408 -9.74105 -9.61317 -9.16131 -8.61973 -8.51715 -8.31277 -6.01888 -3.99736 1.86774 2.92980 3.02811 3.31497 3.39244 3.43074 4.24210 4.46961 4.47352 4.84550 5.04745 5.21952 5.31901 5.43220 5.56336 5.65176 5.76114 5.92808 6.14008 6.50724 6.56081 6.60365 6.91013 7.06072 7.21116 7.35690 7.39962 7.48868 7.82245 8.01536 8.57291 9.03789 9.60551 11.11729 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.081610 B = 0.004586 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.012741 B = 6103.790846 C = 6246.174405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.681 5.681 13 C 0.143 3.857 14 C 0.215 3.785 15 N -0.472 5.472 16 C -0.029 4.029 17 C -0.060 4.060 18 N -0.569 5.569 19 H 0.417 0.583 20 H 0.262 0.738 21 H 0.017 0.983 22 H 0.009 0.991 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.338 0.662 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.169 0.831 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.590 -10.742 -4.114 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.313 5.313 13 C 0.013 3.987 14 C -0.049 4.049 15 N -0.192 5.192 16 C -0.178 4.178 17 C -0.194 4.194 18 N -0.172 5.172 19 H 0.254 0.746 20 H 0.072 0.928 21 H 0.035 0.965 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.156 0.844 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.186 0.814 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 18.248 -10.464 -2.562 21.191 hybrid contribution 0.692 0.864 -2.279 2.534 sum 18.941 -9.600 -4.842 21.780 Atomic orbital electron populations 1.69926 1.06311 1.26830 1.51325 1.25049 0.94741 0.99188 0.94640 0.86758 0.80403 0.83617 0.78377 1.20422 1.21392 1.18978 1.21154 0.89530 0.94483 1.50556 0.91023 1.19545 0.97187 0.92178 0.96157 1.21450 0.90825 0.99763 1.01744 1.22201 0.97916 0.86774 1.00173 1.60446 1.05058 1.15641 1.50110 1.20231 0.89602 0.86508 1.02409 1.23233 1.03368 0.96584 0.81737 1.70281 1.17353 1.02916 1.28608 1.22414 1.05921 0.96479 0.92968 1.22743 1.10384 0.88970 0.97332 1.43354 1.51800 1.11704 1.10366 0.74558 0.92779 0.96486 0.97292 0.93089 0.91692 0.90937 0.95600 0.84444 0.93998 0.87884 0.81365 0.80741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 11 C 0.06 0.91 5.69 -3.82 -0.02 0.89 16 12 N -0.68 -9.66 6.49 -115.06 -0.75 -10.41 16 13 C 0.14 1.69 6.31 -4.98 -0.03 1.66 16 14 C 0.22 2.66 7.67 -155.42 -1.19 1.47 16 15 N -0.47 -6.90 11.25 -10.82 -0.12 -7.02 16 16 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 17 C -0.06 -0.54 12.04 -16.56 -0.20 -0.74 16 18 N -0.57 -5.18 6.15 -10.23 -0.06 -5.24 16 19 H 0.42 2.45 8.96 -40.82 -0.37 2.09 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.34 4.48 8.72 -39.29 -0.34 4.14 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 267.94 15.07 4.04 4.04 Total: -1.00 -33.90 267.94 -7.58 -41.48 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.44 Total: 0.83 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.34 Total: -13.37 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.16 Total: -50.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.90 -7.58 -41.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388253632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.871 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds