Wall clock time and date at job start Sun Mar 29 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 11 15 15 N 1.30503 * 125.64811 * 274.68817 * 14 13 12 16 16 C 1.34130 * 109.25782 * 179.89378 * 15 14 13 17 17 C 1.34665 * 108.01781 * 0.37123 * 16 15 14 18 18 N 1.35039 * 125.65362 * 94.99989 * 14 13 12 19 19 H 0.97003 * 126.39585 * 359.97438 * 18 14 13 20 20 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 22 22 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 23 23 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 24 24 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 25 25 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 26 26 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 27 27 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 28 28 H 1.09004 * 109.47031 * 299.99620 * 13 12 11 29 29 H 1.08995 * 109.47111 * 59.99900 * 13 12 11 30 30 H 1.07996 * 125.99012 * 180.18873 * 16 15 14 31 31 H 1.08004 * 126.59060 * 179.80904 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 6 7.9738 -5.4946 -0.0017 15 7 8.1252 -6.2461 1.0544 16 6 8.5489 -7.4611 0.6758 17 6 8.6723 -7.4600 -0.6652 18 7 8.3076 -6.2128 -1.0955 19 1 8.2921 -5.9027 -2.0145 20 1 -0.4850 0.8401 -0.0004 21 1 3.8746 -0.6809 0.8905 22 1 3.8752 -0.6798 -0.8895 23 1 3.6584 -3.1502 -0.8903 24 1 3.6578 -3.1506 0.8896 25 1 5.9149 -2.1230 0.8899 26 1 5.9148 -2.1228 -0.8900 27 1 5.6656 -4.5375 -0.7825 28 1 7.8868 -3.5564 -0.8899 29 1 7.8861 -3.5576 0.8901 30 1 8.7576 -8.2933 1.3317 31 1 8.9963 -8.2849 -1.2825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388253632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:49 Heat of formation + Delta-G solvation = 20.799924 kcal Electronic energy + Delta-G solvation = -12810.890126 eV Core-core repulsion = 10512.676198 eV Total energy + Delta-G solvation = -2298.213927 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.91193 -37.85170 -35.49333 -33.62047 -33.40071 -30.99962 -28.54962 -25.98406 -23.62977 -22.45091 -22.01566 -21.40560 -19.01279 -18.71497 -16.95145 -16.53896 -16.11412 -15.59793 -15.26636 -15.05699 -14.64152 -14.57750 -14.22223 -13.59712 -13.30218 -13.20990 -12.64204 -12.43986 -11.79488 -11.56247 -11.47372 -11.27413 -11.00345 -10.94368 -10.74898 -9.48659 -9.28925 -8.28116 -6.32811 1.09774 1.37264 1.40554 1.52729 2.14565 2.26108 2.38275 3.07265 3.31510 3.54582 4.09639 4.22031 4.32136 4.44238 4.47750 4.63815 4.69706 4.83771 4.89442 5.00201 5.11769 5.15948 5.52439 5.62367 5.68004 5.83432 5.99272 6.30205 6.38281 6.53690 6.75915 7.20967 7.31871 8.89114 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.081610 B = 0.004586 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.012741 B = 6103.790846 C = 6246.174405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.026 0.974 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.072 3.928 12 N -0.695 5.695 13 C 0.148 3.852 14 C 0.195 3.805 15 N -0.521 5.521 16 C -0.067 4.067 17 C -0.036 4.036 18 N -0.556 5.556 19 H 0.434 0.566 20 H 0.266 0.734 21 H 0.021 0.979 22 H 0.024 0.976 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.343 0.657 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.186 -10.294 -5.369 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.048 4.048 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.327 5.327 13 C 0.018 3.982 14 C -0.069 4.069 15 N -0.241 5.241 16 C -0.214 4.214 17 C -0.171 4.171 18 N -0.160 5.160 19 H 0.274 0.726 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.198 0.802 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 20.866 -10.032 -3.841 23.469 hybrid contribution -0.165 0.568 -1.900 1.990 sum 20.701 -9.465 -5.740 23.475 Atomic orbital electron populations 1.70093 1.08489 1.28206 1.52792 1.26116 0.95680 1.03856 0.94031 0.85562 0.79506 0.77671 0.79313 1.18861 1.21148 1.16677 1.21545 0.92462 0.92983 1.50387 0.95516 1.19492 0.93612 0.94923 0.96759 1.21272 0.94155 0.97003 1.00618 1.21910 0.94455 0.88104 1.01165 1.60313 1.06975 1.14631 1.50813 1.20199 0.87820 0.86785 1.03421 1.23177 1.04559 0.96852 0.82358 1.70187 1.18773 1.04596 1.30589 1.22835 1.07539 0.96284 0.94761 1.23351 1.07477 0.89373 0.96852 1.43319 1.50614 1.11446 1.10666 0.72589 0.92518 0.96055 0.95781 0.93396 0.93815 0.90856 0.93623 0.83918 0.90990 0.88697 0.80151 0.76681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.96 44.38 27.47 68.60 1.88 46.27 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.54 -31.69 9.66 25.60 0.25 -31.44 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.63 5.41 30.59 0.17 -3.47 16 11 C 0.07 2.14 5.69 86.30 0.49 2.63 16 12 N -0.69 -18.61 6.49 -517.93 -3.36 -21.97 16 13 C 0.15 3.20 6.31 85.56 0.54 3.74 16 14 C 0.20 4.51 7.67 138.13 1.06 5.57 16 15 N -0.52 -14.92 11.25 -188.14 -2.12 -17.04 16 16 C -0.07 -1.45 11.87 83.52 0.99 -0.46 16 17 C -0.04 -0.53 12.04 83.08 1.00 0.47 16 18 N -0.56 -8.58 6.15 -186.27 -1.15 -9.73 16 19 H 0.43 3.63 8.96 -92.71 -0.83 2.79 16 20 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 21 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 22 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.34 8.53 8.72 -89.69 -0.78 7.75 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -75.32 267.94 0.10 -75.22 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.54 Total: 10.96 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 5.08 Total: -22.88 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -6.32 Total: -109.57 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -75.32 0.10 -75.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388253632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.022 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds