Wall clock time and date at job start Sun Mar 29 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46897 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99888 * 180.02562 * 11 10 9 13 13 H 1.08995 * 112.88760 * 334.66658 * 12 11 10 14 14 C 1.53956 * 113.66145 * 106.01478 * 12 11 10 15 15 C 1.54252 * 87.18766 * 89.78761 * 14 12 11 16 16 C 1.52910 * 86.78025 * 24.73316 * 15 14 12 17 17 C 1.52906 * 121.13621 * 100.82368 * 16 15 14 18 18 C 1.53955 * 86.78060 * 100.81751 * 17 16 15 19 19 C 1.52911 * 121.13467 * 209.38544 * 16 15 14 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.00901 * 111.00013 * 303.95615 * 11 10 9 26 26 H 1.09002 * 113.57537 * 204.33551 * 14 12 11 27 27 H 1.08999 * 113.57972 * 335.13308 * 14 12 11 28 28 H 1.09000 * 113.66096 * 270.26079 * 15 14 12 29 29 H 1.09001 * 113.75295 * 139.21789 * 15 14 12 30 30 H 1.09000 * 113.66096 * 215.29278 * 17 16 15 31 31 H 1.09003 * 113.66093 * 346.34971 * 17 16 15 32 32 H 1.08996 * 113.57923 * 270.12862 * 18 17 16 33 33 H 1.09006 * 113.57330 * 139.33523 * 18 17 16 34 34 H 1.08998 * 113.66319 * 13.65093 * 19 16 15 35 35 H 1.08998 * 113.66447 * 144.70780 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0758 -0.0037 13 1 3.4074 -5.8339 -0.4332 14 6 2.5217 -6.8014 1.3515 15 6 1.3629 -7.6938 0.8616 16 6 1.8220 -7.3620 -0.5587 17 6 2.6593 -8.3510 -1.3703 18 6 1.3548 -8.7252 -2.0972 19 6 0.8306 -7.3272 -1.7222 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 0.8746 -4.9848 0.7783 26 1 3.4568 -7.3422 1.4976 27 1 2.2595 -6.1709 2.2011 28 1 0.3755 -7.3015 1.1051 29 1 1.4776 -8.7456 1.1240 30 1 3.3977 -7.8736 -2.0145 31 1 3.0766 -9.1630 -0.7746 32 1 0.8078 -9.5384 -1.6202 33 1 1.4799 -8.8707 -3.1702 34 1 -0.2130 -7.3212 -1.4077 35 1 1.0548 -6.5620 -2.4654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388270122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:28 Heat of formation + Delta-G solvation = 8.425891 kcal Electronic energy + Delta-G solvation = -13721.617197 eV Core-core repulsion = 11526.407035 eV Total energy + Delta-G solvation = -2195.210162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39304 -37.22945 -35.50306 -33.98713 -30.59244 -26.63406 -26.50063 -25.41006 -24.83507 -22.49353 -21.48455 -18.80014 -18.39027 -16.91637 -16.47901 -16.19732 -16.15306 -15.69397 -14.68248 -14.38542 -14.06351 -13.91460 -13.19489 -13.18551 -12.97583 -12.85552 -12.68482 -12.47411 -12.11729 -11.88552 -11.68568 -11.54376 -11.36015 -10.98193 -10.80945 -10.62242 -10.55802 -9.15875 -8.21104 -6.33107 1.39711 1.43263 1.51276 2.39950 3.12133 3.16133 3.56388 3.79297 3.84692 3.94611 4.04873 4.09061 4.46863 4.57765 4.62224 4.67986 4.72249 4.87960 4.91621 4.99318 5.03284 5.04783 5.12484 5.19460 5.22655 5.33281 5.45386 5.56952 5.65643 5.71949 5.79553 6.16060 6.32700 6.56684 6.83901 7.36273 8.90967 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058733 B = 0.005704 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.620792 B = 4907.872323 C = 5011.822177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.088 3.912 11 N -0.672 5.672 12 C 0.065 3.935 13 H 0.069 0.931 14 C -0.162 4.162 15 C -0.104 4.104 16 C -0.099 4.099 17 C -0.107 4.107 18 C -0.132 4.132 19 C -0.119 4.119 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.007 1.007 23 H 0.054 0.946 24 H 0.017 0.983 25 H 0.337 0.663 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -16.928 -0.134 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.041 4.041 11 N -0.302 5.302 12 C -0.045 4.045 13 H 0.087 0.913 14 C -0.201 4.201 15 C -0.142 4.142 16 C -0.100 4.100 17 C -0.145 4.145 18 C -0.169 4.169 19 C -0.157 4.157 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.012 0.988 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.156 0.844 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.666 -16.806 -0.823 17.461 hybrid contribution 0.343 1.271 0.907 1.598 sum 5.010 -15.535 0.085 16.323 Atomic orbital electron populations 1.70104 1.07871 1.27917 1.51301 1.25988 0.95771 1.03416 0.94513 0.85458 0.78241 0.77869 0.79210 1.19155 1.20689 1.19090 1.21583 0.93509 0.92276 1.51167 0.92201 1.18909 0.94275 0.92331 0.94942 1.21772 0.95517 0.88390 0.98402 1.60274 1.19276 1.01080 1.49530 1.22634 0.94791 0.90321 0.96791 0.91263 1.23619 1.00201 0.99463 0.96853 1.22582 0.97766 1.00205 0.93611 1.22673 0.98144 0.94984 0.94203 1.22594 0.96374 0.97638 0.97904 1.22839 0.96865 0.96657 1.00556 1.22500 0.98342 0.97177 0.97692 0.92694 0.99138 0.98840 0.92726 0.96484 0.84435 0.88540 0.92417 0.90636 0.89761 0.90225 0.90016 0.89328 0.91101 0.92535 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.81 5.23 29.85 0.16 1.97 16 10 C 0.09 3.86 5.48 86.30 0.47 4.33 16 11 N -0.67 -24.85 6.32 -490.05 -3.10 -27.95 16 12 C 0.07 1.93 4.06 45.21 0.18 2.11 16 13 H 0.07 2.12 7.88 -2.39 -0.02 2.10 16 14 C -0.16 -3.91 7.63 31.34 0.24 -3.67 16 15 C -0.10 -2.31 7.63 30.99 0.24 -2.07 16 16 C -0.10 -2.42 0.99 -52.31 -0.05 -2.47 16 17 C -0.11 -2.12 7.84 30.89 0.24 -1.88 16 18 C -0.13 -2.55 8.08 31.23 0.25 -2.30 16 19 C -0.12 -3.09 7.58 30.89 0.23 -2.86 16 20 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 24 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.34 12.30 8.18 -89.69 -0.73 11.56 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 28 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -63.75 285.56 2.18 -61.57 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.30 Total: 15.15 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 2.66 Total: -38.04 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.81 Total: -85.52 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.75 2.18 -61.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388270122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.999 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds