Wall clock time and date at job start Sun Mar 29 2020 21:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32993 * 119.99715 * 2 1 4 4 C 1.47104 * 120.00199 * 0.02562 * 3 2 1 5 5 O 1.21619 * 119.99746 * 5.49729 * 4 3 2 6 6 N 1.34774 * 120.00168 * 185.50635 * 4 3 2 7 7 C 1.46498 * 119.99899 * 185.00097 * 6 4 3 8 8 C 1.53010 * 109.46953 * 175.17916 * 7 6 4 9 9 C 1.50699 * 115.54699 * 65.22101 * 8 7 6 10 10 H 1.08000 * 120.00002 * 264.87337 * 9 8 7 11 11 C 1.37875 * 119.99929 * 84.86655 * 9 8 7 12 12 N 1.31517 * 120.00135 * 184.66357 * 11 9 8 13 13 Si 1.86801 * 120.00343 * 4.66696 * 11 9 8 14 14 H 1.48501 * 109.47223 * 94.51250 * 13 11 9 15 15 H 1.48499 * 109.47248 * 214.51911 * 13 11 9 16 16 H 1.48505 * 109.46706 * 334.51578 * 13 11 9 17 17 C 1.52995 * 117.50085 * 279.55008 * 8 7 6 18 18 C 1.53001 * 117.49994 * 210.88767 * 8 7 6 19 19 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47272 * 299.99879 * 1 2 3 21 21 H 1.09007 * 109.47138 * 60.00155 * 1 2 3 22 22 H 1.07990 * 120.00057 * 180.02562 * 2 1 3 23 23 H 1.07993 * 120.00169 * 180.02562 * 3 2 1 24 24 H 0.96999 * 120.00186 * 5.26866 * 6 4 3 25 25 H 1.08995 * 109.47072 * 295.17955 * 7 6 4 26 26 H 1.08999 * 109.47591 * 55.18466 * 7 6 4 27 27 H 0.96997 * 120.00403 * 180.02562 * 12 11 9 28 28 H 1.08996 * 117.49854 * 359.97438 * 17 8 7 29 29 H 1.09000 * 117.49831 * 145.02184 * 17 8 7 30 30 H 1.08991 * 117.49763 * 214.98137 * 18 8 7 31 31 H 1.09004 * 117.49413 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4364 2.4257 0.0006 5 8 0.2245 2.4281 0.1019 6 7 2.1055 3.5903 -0.1114 7 6 1.3864 4.8618 -0.0010 8 6 2.3867 6.0188 -0.0433 9 6 3.1339 6.1848 -1.3415 10 1 4.1118 5.7425 -1.4620 11 6 2.5690 6.9010 -2.3754 12 7 3.1790 6.9689 -3.5385 13 14 0.9373 7.7749 -2.1241 14 1 1.1864 9.1873 -1.7391 15 1 0.1556 7.7362 -3.3861 16 1 0.1728 7.0958 -1.0473 17 6 3.1328 6.3553 1.2493 18 6 2.0329 7.2875 0.7352 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 2.0470 -0.9352 -0.0004 23 1 3.2519 1.1519 -0.0004 24 1 3.0626 3.5865 -0.2690 25 1 0.6861 4.9564 -0.8309 26 1 0.8391 4.8891 0.9412 27 1 2.7819 7.4731 -4.2658 28 1 2.9108 5.7527 2.1299 29 1 4.1641 6.6971 1.1607 30 1 2.3409 8.2421 0.3087 31 1 1.0872 7.2980 1.2773 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388619026.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:44 Heat of formation + Delta-G solvation = -0.143574 kcal Electronic energy + Delta-G solvation = -13643.475519 eV Core-core repulsion = 11312.060662 eV Total energy + Delta-G solvation = -2331.414857 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.27165 -37.13320 -34.03825 -33.27114 -32.14484 -28.09072 -26.29829 -25.08258 -21.86357 -21.42868 -19.52769 -18.60954 -16.52721 -16.46077 -15.15058 -14.94121 -14.46060 -14.32262 -13.68276 -13.05431 -12.72942 -12.69581 -12.36116 -11.98088 -11.90199 -11.51070 -11.14806 -10.84374 -10.53198 -10.19882 -9.61112 -9.28586 -9.19259 -9.15583 -8.69391 -8.51111 -8.19514 -6.17075 -4.21632 1.67189 3.27654 3.38599 3.44420 3.74736 3.88018 4.39632 4.87662 5.10118 5.13691 5.18519 5.56587 5.68945 5.76709 5.99973 6.01375 6.07613 6.22196 6.26669 6.41872 6.49834 6.55327 6.68118 6.74569 6.99473 7.06910 7.19824 7.67255 8.25302 8.40060 8.82825 8.83519 9.46354 10.94135 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036686 B = 0.008850 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.044949 B = 3163.108076 C = 3323.619805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 C -0.216 4.216 4 C 0.532 3.468 5 O -0.558 6.558 6 N -0.699 5.699 7 C 0.158 3.842 8 C -0.015 4.015 9 C -0.493 4.493 10 H 0.078 0.922 11 C 0.080 3.920 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.254 1.254 17 C -0.179 4.179 18 C -0.192 4.192 19 H 0.045 0.955 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.120 0.880 23 H 0.125 0.875 24 H 0.405 0.595 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -8.681 7.362 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 C -0.237 4.237 4 C 0.320 3.680 5 O -0.440 6.440 6 N -0.348 5.348 7 C 0.034 3.966 8 C -0.016 4.016 9 C -0.530 4.530 10 H 0.096 0.904 11 C -0.123 4.123 12 N -0.531 5.531 13 Si 0.705 3.295 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.178 1.178 17 C -0.216 4.216 18 C -0.230 4.230 19 H 0.065 0.935 20 H 0.101 0.899 21 H 0.096 0.904 22 H 0.138 0.862 23 H 0.143 0.857 24 H 0.240 0.760 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.714 -8.559 7.251 11.541 hybrid contribution -0.194 0.653 -0.154 0.699 sum -2.908 -7.906 7.097 11.015 Atomic orbital electron populations 1.21020 0.92083 1.00341 1.04377 1.23647 0.97277 0.96972 0.91936 1.22732 1.00308 0.92931 1.07731 1.18625 0.87376 0.84579 0.77375 1.90725 1.13989 1.87841 1.51435 1.45812 1.12575 1.05363 1.71014 1.21083 0.93935 0.82089 0.99461 1.19630 0.97138 0.91953 0.92916 1.20199 1.04029 1.34627 0.94113 0.90387 1.24971 0.97141 0.95591 0.94599 1.69894 1.39574 1.41111 1.02508 0.86861 0.84468 0.80346 0.77823 1.20539 1.22002 1.17819 1.22846 0.96936 1.04003 0.97826 1.22957 0.98455 0.96130 1.05460 0.93549 0.89929 0.90372 0.86222 0.85749 0.76005 0.92106 0.93709 0.92480 0.90910 0.89443 0.89290 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.45 36.01 0.30 -1.31 16 2 C -0.08 -0.97 10.35 -36.12 -0.37 -1.34 16 3 C -0.22 -3.06 10.03 -37.81 -0.38 -3.44 16 4 C 0.53 9.81 7.71 -12.67 -0.10 9.71 16 5 O -0.56 -11.71 13.12 5.26 0.07 -11.64 16 6 N -0.70 -13.41 5.47 -61.49 -0.34 -13.75 16 7 C 0.16 3.39 5.12 -4.04 -0.02 3.37 16 8 C -0.02 -0.34 0.82 -155.66 -0.13 -0.46 16 9 C -0.49 -13.02 9.18 -34.44 -0.32 -13.33 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 12 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 13 Si 0.88 21.47 24.94 -169.99 -4.24 17.23 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.25 -5.95 5.69 56.52 0.32 -5.63 16 17 C -0.18 -3.46 9.96 -26.69 -0.27 -3.72 16 18 C -0.19 -3.97 7.31 -26.69 -0.20 -4.16 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.08 1.23 7.07 -51.93 -0.37 0.86 16 21 H 0.08 1.19 7.38 -51.93 -0.38 0.81 16 22 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 23 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 24 H 0.41 7.27 8.32 -40.82 -0.34 6.93 16 25 H 0.06 1.45 7.07 -51.93 -0.37 1.08 16 26 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.09 1.91 7.13 -51.93 -0.37 1.54 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 261.91 15.07 3.95 3.95 Total: -1.00 -30.14 261.91 -5.78 -35.92 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.42 Total: 6.64 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.57 Total: -12.56 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.44 Total: -39.53 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.07 Total: -11.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.24 Total: 17.23 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.14 -5.78 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388619026.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.774 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds