Wall clock time and date at job start Sun Mar 29 2020 21:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32993 * 119.99715 * 2 1 4 4 C 1.47104 * 120.00199 * 0.02562 * 3 2 1 5 5 O 1.21619 * 119.99746 * 5.49729 * 4 3 2 6 6 N 1.34774 * 120.00168 * 185.50635 * 4 3 2 7 7 C 1.46498 * 119.99899 * 185.00097 * 6 4 3 8 8 C 1.53010 * 109.46953 * 175.17916 * 7 6 4 9 9 C 1.50699 * 115.54699 * 65.22101 * 8 7 6 10 10 H 1.08000 * 120.00002 * 264.87337 * 9 8 7 11 11 C 1.37875 * 119.99929 * 84.86655 * 9 8 7 12 12 N 1.31517 * 120.00135 * 184.66357 * 11 9 8 13 13 Si 1.86801 * 120.00343 * 4.66696 * 11 9 8 14 14 H 1.48501 * 109.47223 * 94.51250 * 13 11 9 15 15 H 1.48499 * 109.47248 * 214.51911 * 13 11 9 16 16 H 1.48505 * 109.46706 * 334.51578 * 13 11 9 17 17 C 1.52995 * 117.50085 * 279.55008 * 8 7 6 18 18 C 1.53001 * 117.49994 * 210.88767 * 8 7 6 19 19 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47272 * 299.99879 * 1 2 3 21 21 H 1.09007 * 109.47138 * 60.00155 * 1 2 3 22 22 H 1.07990 * 120.00057 * 180.02562 * 2 1 3 23 23 H 1.07993 * 120.00169 * 180.02562 * 3 2 1 24 24 H 0.96999 * 120.00186 * 5.26866 * 6 4 3 25 25 H 1.08995 * 109.47072 * 295.17955 * 7 6 4 26 26 H 1.08999 * 109.47591 * 55.18466 * 7 6 4 27 27 H 0.96997 * 120.00403 * 180.02562 * 12 11 9 28 28 H 1.08996 * 117.49854 * 359.97438 * 17 8 7 29 29 H 1.09000 * 117.49831 * 145.02184 * 17 8 7 30 30 H 1.08991 * 117.49763 * 214.98137 * 18 8 7 31 31 H 1.09004 * 117.49413 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4364 2.4257 0.0006 5 8 0.2245 2.4281 0.1019 6 7 2.1055 3.5903 -0.1114 7 6 1.3864 4.8618 -0.0010 8 6 2.3867 6.0188 -0.0433 9 6 3.1339 6.1848 -1.3415 10 1 4.1118 5.7425 -1.4620 11 6 2.5690 6.9010 -2.3754 12 7 3.1790 6.9689 -3.5385 13 14 0.9373 7.7749 -2.1241 14 1 1.1864 9.1873 -1.7391 15 1 0.1556 7.7362 -3.3861 16 1 0.1728 7.0958 -1.0473 17 6 3.1328 6.3553 1.2493 18 6 2.0329 7.2875 0.7352 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 2.0470 -0.9352 -0.0004 23 1 3.2519 1.1519 -0.0004 24 1 3.0626 3.5865 -0.2690 25 1 0.6861 4.9564 -0.8309 26 1 0.8391 4.8891 0.9412 27 1 2.7819 7.4731 -4.2658 28 1 2.9108 5.7527 2.1299 29 1 4.1641 6.6971 1.1607 30 1 2.3409 8.2421 0.3087 31 1 1.0872 7.2980 1.2773 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388619026.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:44 Heat of formation + Delta-G solvation = -20.888294 kcal Electronic energy + Delta-G solvation = -13644.375077 eV Core-core repulsion = 11312.060662 eV Total energy + Delta-G solvation = -2332.314415 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73163 -38.80188 -35.28872 -34.71543 -34.23473 -29.42145 -27.99366 -26.81839 -23.42722 -22.78685 -21.22064 -20.12217 -18.35452 -17.80724 -16.96549 -16.50262 -16.04166 -15.56034 -15.25034 -14.80814 -14.39462 -14.17316 -13.98939 -13.47865 -13.11311 -13.04734 -12.72282 -12.49788 -12.20440 -11.99612 -11.51546 -11.05039 -10.67981 -10.64186 -10.41578 -10.24390 -9.73966 -8.31778 -6.38003 0.54868 1.32149 1.38477 1.49612 2.35400 2.38514 2.46249 3.03832 3.27192 3.96104 4.04275 4.17553 4.34991 4.42181 4.49214 4.54474 4.79545 4.85341 4.86325 4.87841 5.08170 5.16874 5.29019 5.46934 5.49084 5.66213 5.68515 5.70065 6.27099 6.69558 6.81329 7.32547 7.39543 8.82739 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036686 B = 0.008850 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.044949 B = 3163.108076 C = 3323.619805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 C -0.238 4.238 4 C 0.524 3.476 5 O -0.591 6.591 6 N -0.703 5.703 7 C 0.167 3.833 8 C -0.040 4.040 9 C -0.481 4.481 10 H 0.046 0.954 11 C 0.026 3.974 12 N -0.943 5.943 13 Si 0.928 3.072 14 H -0.269 1.269 15 H -0.303 1.303 16 H -0.237 1.237 17 C -0.152 4.152 18 C -0.191 4.191 19 H 0.078 0.922 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.166 0.834 23 H 0.152 0.848 24 H 0.410 0.590 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -9.913 9.214 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.259 4.259 4 C 0.315 3.685 5 O -0.475 6.475 6 N -0.352 5.352 7 C 0.043 3.957 8 C -0.041 4.041 9 C -0.519 4.519 10 H 0.064 0.936 11 C -0.172 4.172 12 N -0.583 5.583 13 Si 0.754 3.246 14 H -0.194 1.194 15 H -0.230 1.230 16 H -0.160 1.160 17 C -0.189 4.189 18 C -0.229 4.229 19 H 0.097 0.903 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.183 0.817 23 H 0.169 0.831 24 H 0.245 0.755 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.970 -9.799 9.133 13.720 hybrid contribution -0.082 0.927 -0.712 1.171 sum -3.051 -8.872 8.422 12.607 Atomic orbital electron populations 1.21014 0.93157 1.01765 1.02246 1.24079 0.96716 0.98146 0.88339 1.22777 1.01511 0.91159 1.10430 1.19403 0.87274 0.85639 0.76192 1.90710 1.15509 1.88371 1.52880 1.45830 1.12731 1.05108 1.71499 1.20807 0.93357 0.82868 0.98704 1.19458 0.98685 0.93612 0.92343 1.20379 1.02846 1.32736 0.95896 0.93594 1.25720 1.00307 0.96804 0.94418 1.70021 1.41553 1.43103 1.03599 0.86036 0.80954 0.79887 0.77733 1.19407 1.23016 1.16028 1.22876 0.96586 1.02657 0.96777 1.23030 1.00094 0.94889 1.04904 0.90284 0.91805 0.92881 0.81695 0.83069 0.75475 0.95149 0.92602 0.92656 0.88056 0.89467 0.90220 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.45 71.24 0.60 -2.49 16 2 C -0.05 -1.14 10.35 24.52 0.25 -0.89 16 3 C -0.24 -6.20 10.03 23.43 0.24 -5.97 16 4 C 0.52 18.91 7.71 86.57 0.67 19.58 16 5 O -0.59 -24.75 13.12 -4.09 -0.05 -24.80 16 6 N -0.70 -26.51 5.47 -466.70 -2.55 -29.07 16 7 C 0.17 7.03 5.12 86.38 0.44 7.48 16 8 C -0.04 -1.72 0.82 -52.93 -0.04 -1.77 16 9 C -0.48 -25.71 9.18 25.60 0.24 -25.48 16 10 H 0.05 2.68 8.06 -2.91 -0.02 2.66 16 11 C 0.03 1.45 5.47 84.65 0.46 1.92 16 12 N -0.94 -57.69 13.96 21.45 0.30 -57.39 16 13 Si 0.93 44.41 24.94 68.60 1.71 46.12 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 16 H -0.24 -10.59 5.69 99.48 0.57 -10.03 16 17 C -0.15 -5.46 9.96 30.62 0.30 -5.15 16 18 C -0.19 -7.41 7.31 30.62 0.22 -7.19 16 19 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 20 H 0.06 1.84 7.07 -2.39 -0.02 1.82 16 21 H 0.05 1.59 7.38 -2.38 -0.02 1.57 16 22 H 0.17 2.09 8.06 -2.92 -0.02 2.06 16 23 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 24 H 0.41 14.48 8.32 -92.71 -0.77 13.71 16 25 H 0.03 1.44 7.07 -2.39 -0.02 1.43 16 26 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.08 3.24 7.13 -2.39 -0.02 3.23 16 31 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -66.60 261.91 2.99 -63.62 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.20 Total: 21.47 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.38 Total: -19.95 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.26 Total: -86.45 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.71 Total: 46.12 kcal Total: -66.60 2.99 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388619026.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.727 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds