Wall clock time and date at job start Sun Mar 29 2020 21:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46904 * 110.99913 * 176.04489 * 12 2 1 14 14 C 1.46891 * 111.00371 * 300.00463 * 12 2 1 15 15 C 1.50703 * 109.47378 * 169.99970 * 14 12 2 16 16 C 1.39870 * 125.89966 * 94.71345 * 15 14 12 17 17 C 1.35318 * 107.91757 * 179.86282 * 16 15 14 18 18 N 1.34948 * 107.74367 * 0.39507 * 17 16 15 19 19 H 0.97010 * 126.03128 * 179.74312 * 18 17 16 20 20 N 1.30841 * 125.89752 * 275.02362 * 15 14 12 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46959 * 60.00498 * 13 12 2 26 26 H 1.09004 * 109.46998 * 180.02562 * 13 12 2 27 27 H 1.09000 * 109.47411 * 300.00539 * 13 12 2 28 28 H 1.09003 * 109.47077 * 289.99597 * 14 12 2 29 29 H 1.08998 * 109.47654 * 49.99459 * 14 12 2 30 30 H 1.07994 * 126.04013 * 359.97438 * 16 15 14 31 31 H 1.07998 * 126.12319 * 180.14075 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 6 2.9899 -0.7890 4.4312 17 6 2.8973 -1.7366 5.3927 18 7 1.7518 -2.4199 5.1877 19 1 1.4258 -3.1609 5.7223 20 7 1.1167 -1.8706 4.0666 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 3.9187 0.2052 1.1592 26 1 3.8209 -1.3116 2.0860 27 1 3.8030 -1.3531 0.3068 28 1 2.0518 0.9346 2.5280 29 1 0.4722 0.1325 2.3564 30 1 3.7946 -0.0783 4.3149 31 1 3.6140 -1.9167 6.1803 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388627782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:34 Heat of formation + Delta-G solvation = 60.959022 kcal Electronic energy + Delta-G solvation = -13746.924813 eV Core-core repulsion = 11450.452315 eV Total energy + Delta-G solvation = -2296.472498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.98962 -38.66982 -34.96206 -32.80853 -31.04847 -30.66265 -28.79006 -26.65971 -25.09213 -22.30577 -21.57078 -20.32295 -18.93026 -18.28230 -17.11726 -16.02662 -15.87953 -15.40183 -14.93276 -14.53033 -14.33409 -14.25687 -13.57044 -13.36654 -12.94007 -12.80270 -12.57738 -12.41607 -12.10080 -11.95184 -11.75377 -11.37927 -10.91310 -10.53332 -10.28247 -9.56251 -8.90428 -8.09349 -6.21018 1.07802 1.43427 1.44704 1.54734 1.86599 2.15802 2.44913 3.18784 3.54245 3.81996 4.10956 4.44584 4.56307 4.65824 4.73386 4.80751 4.94758 4.95310 5.05384 5.10101 5.20188 5.27665 5.51190 5.70967 5.75361 5.79428 6.26742 6.41398 6.61497 6.72878 6.87310 6.93364 7.47752 8.96871 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058589 B = 0.007387 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.794762 B = 3789.504542 C = 3957.419375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.029 1.029 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.541 5.541 13 C 0.046 3.954 14 C 0.126 3.874 15 C 0.079 3.921 16 C -0.292 4.292 17 C 0.077 3.923 18 N -0.474 5.474 19 H 0.451 0.549 20 N -0.326 5.326 21 H 0.026 0.974 22 H 0.063 0.937 23 H 0.030 0.970 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -3.800 14.673 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.012 1.012 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.266 5.266 13 C -0.102 4.102 14 C -0.003 4.003 15 C -0.087 4.087 16 C -0.321 4.321 17 C -0.071 4.071 18 N -0.184 5.184 19 H 0.297 0.703 20 N -0.151 5.151 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.639 -4.813 14.368 15.583 hybrid contribution 0.951 0.705 -0.670 1.361 sum 4.591 -4.108 13.698 15.019 Atomic orbital electron populations 1.21687 0.97513 0.99030 0.99786 1.19066 0.92524 0.90478 0.86877 1.01193 1.21417 1.31187 1.12269 0.90946 0.92408 1.25709 0.95371 0.95770 1.01854 1.70012 1.37734 1.24163 1.24088 0.85512 0.78810 0.78207 0.78824 1.20344 1.20712 1.19276 1.61989 1.10700 1.52571 1.01364 1.22157 0.87481 0.99130 1.01467 1.20380 1.00928 0.92821 0.86211 1.22208 0.94542 0.95249 0.96730 1.21721 1.02180 1.07669 1.00554 1.23212 0.90627 0.92765 1.00453 1.46421 1.17941 1.29981 1.24019 0.70302 1.77283 1.22723 1.13448 1.01638 0.95519 0.91828 0.95089 0.92873 0.96788 0.91202 0.92596 0.93278 0.90683 0.82673 0.75836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.33 8.76 71.98 0.63 -5.70 16 2 C 0.22 11.56 2.06 44.17 0.09 11.65 16 3 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 4 C -0.52 -29.56 7.93 25.60 0.20 -29.36 16 5 H 0.06 3.28 6.39 -2.91 -0.02 3.26 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.54 -24.86 4.61 -906.05 -4.18 -29.04 16 13 C 0.05 1.89 9.05 127.69 1.16 3.05 16 14 C 0.13 5.00 5.34 85.56 0.46 5.46 16 15 C 0.08 2.76 5.94 43.10 0.26 3.01 16 16 C -0.29 -7.70 9.62 21.99 0.21 -7.49 16 17 C 0.08 1.47 11.99 83.54 1.00 2.47 16 18 N -0.47 -10.85 7.36 -57.59 -0.42 -11.28 16 19 H 0.45 6.76 8.96 -213.33 -1.91 4.85 16 20 N -0.33 -11.30 12.70 -47.38 -0.60 -11.91 16 21 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 23 H 0.03 1.42 6.20 -2.38 -0.01 1.40 16 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 2.51 6.32 -2.38 -0.02 2.50 16 27 H 0.06 2.47 6.23 -2.39 -0.01 2.46 16 28 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 29 H 0.07 3.10 5.83 -2.39 -0.01 3.09 16 30 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.23 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.04 255.82 0.74 -68.30 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -0.78 Total: 6.81 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.46 Total: -15.80 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.96 Total: -105.88 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.04 0.74 -68.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388627782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.257 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds