Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46960 * 2 1 4 4 C 1.50700 * 109.47535 * 120.00395 * 2 1 3 5 5 H 1.07990 * 120.00170 * 120.00332 * 4 2 1 6 6 C 1.37882 * 119.99572 * 299.99842 * 4 2 1 7 7 N 1.31514 * 119.99647 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00156 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47613 * 89.99800 * 8 6 4 10 10 H 1.48501 * 109.47058 * 209.99927 * 8 6 4 11 11 H 1.48499 * 109.47367 * 329.99608 * 8 6 4 12 12 N 1.46903 * 109.46964 * 240.00383 * 2 1 3 13 13 C 1.46900 * 110.99915 * 183.94968 * 12 2 1 14 14 C 1.46904 * 110.99799 * 60.00164 * 12 2 1 15 15 C 1.50701 * 109.46641 * 189.99830 * 14 12 2 16 16 C 1.39877 * 125.89624 * 95.02074 * 15 14 12 17 17 C 1.35319 * 107.91756 * 179.97438 * 16 15 14 18 18 N 1.34945 * 107.74770 * 0.02562 * 17 16 15 19 19 H 0.97001 * 126.04375 * 179.97438 * 18 17 16 20 20 N 1.30833 * 125.90276 * 275.02194 * 15 14 12 21 21 H 1.08997 * 109.47730 * 59.99887 * 1 2 3 22 22 H 1.09001 * 109.47248 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47140 * 299.99543 * 1 2 3 24 24 H 0.97005 * 119.99776 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.47557 * 296.04857 * 13 12 2 26 26 H 1.09006 * 109.47205 * 56.04807 * 13 12 2 27 27 H 1.08997 * 109.47326 * 176.04335 * 13 12 2 28 28 H 1.08991 * 109.47690 * 69.99872 * 14 12 2 29 29 H 1.08999 * 109.46790 * 309.99109 * 14 12 2 30 30 H 1.07996 * 126.04364 * 0.02562 * 16 15 14 31 31 H 1.07994 * 126.12549 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9949 3.9069 11 1 0.8470 2.1764 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5486 -0.0262 -2.4211 15 6 1.8579 -0.8909 -3.6160 16 6 0.9835 -1.8023 -4.2171 17 6 1.6319 -2.3779 -5.2560 18 7 2.8725 -1.8499 -5.3101 19 1 3.5612 -2.0753 -5.9550 20 7 2.9905 -0.9187 -4.2702 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 1.9028 -0.5285 4.4375 25 1 3.9192 0.2045 -1.2301 26 1 3.8070 -1.2915 -0.2720 27 1 3.8163 -1.3720 -2.0501 28 1 2.0517 0.9347 -2.5280 29 1 0.4721 0.1325 -2.3564 30 1 -0.0301 -2.0094 -3.9073 31 1 1.2289 -3.1264 -5.9221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388627802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = 93.551857 kcal Electronic energy + Delta-G solvation = -13802.141106 eV Core-core repulsion = 11507.081939 eV Total energy + Delta-G solvation = -2295.059167 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91737 -37.12597 -32.97625 -31.51984 -29.93897 -29.66342 -27.29103 -24.56700 -23.53022 -21.25877 -19.86027 -18.98092 -17.92548 -16.72549 -15.24328 -14.75505 -14.41017 -13.79438 -13.52649 -13.32147 -13.11526 -12.60627 -12.41439 -11.87770 -11.61364 -11.00864 -10.81067 -10.57171 -10.44102 -10.33846 -10.06931 -9.50364 -9.19692 -8.95407 -8.53114 -8.50869 -7.29594 -6.03012 -4.01371 2.07189 3.00820 3.06623 3.29702 3.39586 3.41819 4.43208 4.86119 4.98140 5.14130 5.30719 5.48136 5.90111 6.02405 6.04818 6.22046 6.25881 6.40223 6.46595 6.54919 6.68515 6.84444 6.84892 7.02837 7.32763 7.43255 7.62591 7.90623 7.99074 8.13690 8.69739 9.04047 9.58721 11.09759 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.060690 B = 0.007880 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.250665 B = 3552.511792 C = 3739.932519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.268 1.268 12 N -0.520 5.520 13 C 0.037 3.963 14 C 0.121 3.879 15 C 0.101 3.899 16 C -0.253 4.253 17 C 0.046 3.954 18 N -0.486 5.486 19 H 0.434 0.566 20 N -0.294 5.294 21 H 0.030 0.970 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.264 0.736 25 H 0.012 0.988 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.093 0.907 30 H 0.146 0.854 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -0.509 -15.871 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.111 4.111 14 C -0.009 4.009 15 C -0.067 4.067 16 C -0.283 4.283 17 C -0.101 4.101 18 N -0.194 5.194 19 H 0.277 0.723 20 N -0.118 5.118 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.164 0.836 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.298 -0.513 -15.733 15.794 hybrid contribution -0.795 0.997 -0.122 1.281 sum -2.093 0.484 -15.855 16.000 Atomic orbital electron populations 1.22233 0.98493 1.01497 0.98256 1.19709 0.91500 0.92701 0.88629 0.98349 1.20990 1.31838 1.13566 0.87852 0.89861 1.24924 0.95872 0.96636 0.95779 1.69884 1.45816 1.40309 0.97852 0.86875 0.80763 0.83830 0.76832 1.20503 1.22543 1.19370 1.61922 1.10523 1.51624 1.00428 1.22275 0.87461 0.99166 1.02207 1.20573 1.01235 0.92659 0.86404 1.22369 0.90848 0.97234 0.96213 1.21446 1.02710 1.03974 1.00176 1.22491 0.86719 1.00316 1.00603 1.46321 1.12422 1.33582 1.27055 0.72310 1.77322 1.22216 1.11259 1.01046 0.95066 0.91860 0.94005 0.92654 0.96983 0.90024 0.93027 0.94391 0.88903 0.83594 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.47 37.16 0.31 -2.92 16 2 C 0.18 4.40 1.65 -68.86 -0.11 4.29 16 3 H 0.00 -0.02 7.20 -51.92 -0.37 -0.40 16 4 C -0.50 -14.29 8.46 -34.44 -0.29 -14.59 16 5 H 0.08 2.57 6.65 -52.49 -0.35 2.22 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.89 22.06 24.37 -169.99 -4.14 17.92 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 12 N -0.52 -11.35 4.61 -237.73 -1.10 -12.45 16 13 C 0.04 0.80 9.07 60.06 0.54 1.34 16 14 C 0.12 2.23 5.34 -4.97 -0.03 2.21 16 15 C 0.10 1.72 5.97 -82.40 -0.49 1.23 16 16 C -0.25 -3.63 10.74 -40.01 -0.43 -4.06 16 17 C 0.05 0.52 11.99 -17.22 -0.21 0.31 16 18 N -0.49 -5.96 7.36 30.44 0.22 -5.74 16 19 H 0.43 3.68 8.96 -182.61 -1.64 2.04 16 20 N -0.29 -4.90 11.67 33.67 0.39 -4.50 16 21 H 0.03 0.57 6.20 -51.93 -0.32 0.25 16 22 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 1.90 6.10 -51.93 -0.32 1.59 16 27 H 0.05 1.04 6.53 -51.93 -0.34 0.70 16 28 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.09 1.57 5.83 -51.93 -0.30 1.27 16 30 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 249.17 15.07 3.75 3.75 Total: -1.00 -32.58 249.17 -6.00 -38.57 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.10 Total: -0.42 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.80 Total: -10.27 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.29 Total: -49.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.58 -6.00 -38.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388627802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.123 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds