Wall clock time and date at job start Sun Mar 29 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47170 * 95.00111 * 5 4 3 7 7 C 1.46897 * 111.00098 * 293.95542 * 6 5 4 8 8 C 1.46899 * 111.00298 * 170.00109 * 6 5 4 9 9 C 1.50694 * 109.47666 * 190.00332 * 8 6 5 10 10 H 1.08008 * 119.99917 * 359.97438 * 9 8 6 11 11 C 1.37869 * 120.00429 * 179.97438 * 9 8 6 12 12 N 1.31520 * 120.00133 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00387 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46962 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47446 * 119.99520 * 13 11 9 16 16 H 1.48499 * 109.47332 * 240.00103 * 13 11 9 17 17 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 18 18 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 19 19 H 0.96999 * 126.03519 * 0.04296 * 18 2 1 20 20 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 21 21 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 22 22 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 23 23 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 24 24 H 1.08998 * 109.46965 * 215.00352 * 5 4 3 25 25 H 1.09008 * 109.47104 * 335.00363 * 5 4 3 26 26 H 1.08991 * 109.47557 * 60.00065 * 7 6 5 27 27 H 1.09003 * 109.47477 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.47255 * 299.99439 * 7 6 5 29 29 H 1.09007 * 109.46644 * 309.99969 * 8 6 5 30 30 H 1.08999 * 109.47345 * 69.99820 * 8 6 5 31 31 H 0.96995 * 119.99829 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 7 5.3214 1.7297 1.3799 7 6 4.3410 2.4886 2.1678 8 6 6.6366 2.3838 1.4050 9 6 7.1921 2.3416 2.8052 10 1 6.6247 1.8758 3.5975 11 6 8.4245 2.8975 3.0750 12 7 9.1157 3.4642 2.1102 13 14 9.1134 2.8446 4.8105 14 1 8.1485 2.1562 5.7053 15 1 10.4017 2.1060 4.8095 16 1 9.3372 4.2297 5.2968 17 7 3.6334 -0.6524 0.0004 18 7 2.3027 -1.0899 0.0060 19 1 2.0056 -2.0133 0.0104 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5138 23 1 1.9740 2.1211 -0.0009 24 1 5.6423 1.0702 -0.5887 25 1 4.6026 2.5068 -0.4347 26 1 3.3956 1.9468 2.1906 27 1 4.7120 2.6155 3.1848 28 1 4.1882 3.4671 1.7126 29 1 7.3146 1.8623 0.7293 30 1 6.5327 3.4210 1.0864 31 1 9.9826 3.8556 2.3002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388635955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:42 Heat of formation + Delta-G solvation = 71.927212 kcal Electronic energy + Delta-G solvation = -13378.548920 eV Core-core repulsion = 11082.552039 eV Total energy + Delta-G solvation = -2295.996882 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.98798 -36.46877 -32.88340 -32.16891 -30.91507 -27.45601 -27.07621 -26.48922 -23.89409 -20.80562 -20.29026 -19.09155 -17.16689 -16.24176 -15.13648 -14.64077 -14.21835 -13.84069 -13.68433 -13.63650 -13.00089 -12.72639 -12.48857 -11.94811 -11.82751 -11.32329 -11.03356 -10.81918 -10.63034 -10.39673 -10.20716 -9.79753 -9.21058 -8.99565 -8.39972 -8.36481 -7.15921 -5.97148 -3.97704 2.07256 3.02836 3.07680 3.35325 3.42432 3.48163 4.48701 4.69926 4.95342 5.06044 5.25676 5.31582 5.39247 5.63394 5.75429 5.90842 6.03430 6.16900 6.33253 6.35317 6.47738 6.84031 6.90807 7.34807 7.39623 7.48683 7.86357 8.00698 8.15542 8.27807 8.61028 9.10145 9.66068 11.13928 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064504 B = 0.006157 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.975002 B = 4546.772488 C = 4618.776342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.073 3.927 3 C -0.265 4.265 4 C 0.103 3.897 5 C 0.128 3.872 6 N -0.533 5.533 7 C 0.038 3.962 8 C 0.192 3.808 9 C -0.503 4.503 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 N -0.277 5.277 18 N -0.484 5.484 19 H 0.432 0.568 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.142 0.858 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.032 0.968 30 H -0.007 1.007 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 -4.853 -4.566 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.295 4.295 4 C -0.065 4.065 5 C -0.002 4.002 6 N -0.258 5.258 7 C -0.111 4.111 8 C 0.067 3.933 9 C -0.542 4.542 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 N -0.100 5.100 18 N -0.193 5.193 19 H 0.275 0.725 20 H 0.095 0.905 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.160 0.840 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.011 0.989 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.089 -6.248 -4.384 16.909 hybrid contribution -0.286 1.054 0.550 1.223 sum -15.375 -5.194 -3.834 16.676 Atomic orbital electron populations 1.20403 0.87700 1.03654 1.02990 1.21014 0.94267 0.88069 1.02173 1.21176 0.91992 0.98884 1.17453 1.22375 0.95494 0.91423 0.97188 1.20409 0.91805 0.94933 0.93044 1.62047 1.04541 1.51160 1.08086 1.22233 0.94869 0.94381 0.99572 1.19769 0.83470 0.91907 0.98116 1.21199 1.02612 1.36031 0.94370 0.91824 1.24980 0.96869 0.95498 0.97313 1.69972 1.13371 1.38793 1.31822 0.86444 0.78941 0.77513 0.84539 1.19698 1.21030 1.21151 1.77409 0.95099 1.13019 1.24451 1.46347 1.04493 1.07833 1.60579 0.72480 0.90504 0.89770 0.91401 0.84001 0.89912 0.93779 0.93463 0.90890 0.97030 0.95028 0.98915 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.43 36.01 0.38 -0.30 16 2 C 0.07 0.91 7.21 -82.27 -0.59 0.32 16 3 C -0.27 -3.98 9.66 -40.01 -0.39 -4.36 16 4 C 0.10 1.87 5.93 -82.40 -0.49 1.38 16 5 C 0.13 2.53 5.53 -4.98 -0.03 2.50 16 6 N -0.53 -12.31 4.74 -245.84 -1.17 -13.48 16 7 C 0.04 0.79 9.14 60.06 0.55 1.34 16 8 C 0.19 5.18 4.72 -4.98 -0.02 5.15 16 9 C -0.50 -14.57 8.46 -34.45 -0.29 -14.86 16 10 H 0.06 1.84 7.12 -52.48 -0.37 1.47 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.28 -5.06 12.70 33.67 0.43 -4.63 16 18 N -0.48 -6.59 7.36 33.48 0.25 -6.34 16 19 H 0.43 4.29 8.96 -182.61 -1.64 2.65 16 20 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 24 H 0.08 1.65 7.93 -51.93 -0.41 1.24 16 25 H 0.04 0.81 8.12 -51.92 -0.42 0.38 16 26 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 27 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.03 0.90 7.93 -51.92 -0.41 0.49 16 30 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -33.08 265.91 -7.37 -40.45 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.62 Total: -3.29 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.98 Total: -7.35 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.24 Total: -50.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.08 -7.37 -40.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388635955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.380 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds