Wall clock time and date at job start Sun Mar 29 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47170 * 95.00111 * 5 4 3 7 7 C 1.46897 * 111.00098 * 293.95542 * 6 5 4 8 8 C 1.46899 * 111.00298 * 170.00109 * 6 5 4 9 9 C 1.50694 * 109.47666 * 190.00332 * 8 6 5 10 10 H 1.08008 * 119.99917 * 359.97438 * 9 8 6 11 11 C 1.37869 * 120.00429 * 179.97438 * 9 8 6 12 12 N 1.31520 * 120.00133 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00387 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46962 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47446 * 119.99520 * 13 11 9 16 16 H 1.48499 * 109.47332 * 240.00103 * 13 11 9 17 17 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 18 18 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 19 19 H 0.96999 * 126.03519 * 0.04296 * 18 2 1 20 20 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 21 21 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 22 22 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 23 23 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 24 24 H 1.08998 * 109.46965 * 215.00352 * 5 4 3 25 25 H 1.09008 * 109.47104 * 335.00363 * 5 4 3 26 26 H 1.08991 * 109.47557 * 60.00065 * 7 6 5 27 27 H 1.09003 * 109.47477 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.47255 * 299.99439 * 7 6 5 29 29 H 1.09007 * 109.46644 * 309.99969 * 8 6 5 30 30 H 1.08999 * 109.47345 * 69.99820 * 8 6 5 31 31 H 0.96995 * 119.99829 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 7 5.3214 1.7297 1.3799 7 6 4.3410 2.4886 2.1678 8 6 6.6366 2.3838 1.4050 9 6 7.1921 2.3416 2.8052 10 1 6.6247 1.8758 3.5975 11 6 8.4245 2.8975 3.0750 12 7 9.1157 3.4642 2.1102 13 14 9.1134 2.8446 4.8105 14 1 8.1485 2.1562 5.7053 15 1 10.4017 2.1060 4.8095 16 1 9.3372 4.2297 5.2968 17 7 3.6334 -0.6524 0.0004 18 7 2.3027 -1.0899 0.0060 19 1 2.0056 -2.0133 0.0104 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5138 23 1 1.9740 2.1211 -0.0009 24 1 5.6423 1.0702 -0.5887 25 1 4.6026 2.5068 -0.4347 26 1 3.3956 1.9468 2.1906 27 1 4.7120 2.6155 3.1848 28 1 4.1882 3.4671 1.7126 29 1 7.3146 1.8623 0.7293 30 1 6.5327 3.4210 1.0864 31 1 9.9826 3.8556 2.3002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388635955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:42 Heat of formation + Delta-G solvation = 47.409410 kcal Electronic energy + Delta-G solvation = -13379.612092 eV Core-core repulsion = 11082.552039 eV Total energy + Delta-G solvation = -2297.060053 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.15465 -38.25726 -34.82182 -33.49395 -32.11660 -29.38702 -28.49061 -27.68308 -25.83767 -22.64746 -21.42013 -20.50110 -18.47935 -18.21050 -16.87218 -16.27303 -15.85460 -15.35506 -15.34430 -14.64236 -14.23267 -13.96530 -13.63069 -13.45488 -13.32249 -12.95527 -12.82763 -12.60901 -12.51225 -12.26230 -11.90676 -11.41662 -11.28417 -10.61606 -10.27374 -9.49661 -9.00869 -8.19299 -6.29282 0.96661 1.41564 1.42671 1.56292 1.77436 2.04399 2.42409 3.13064 3.47976 3.72155 3.87455 4.26848 4.46948 4.50194 4.64676 4.70730 4.77505 4.81189 4.90407 5.08448 5.15203 5.18575 5.29700 5.30924 5.64378 5.69017 6.04885 6.32977 6.54011 6.60238 6.82195 6.86385 7.40064 8.92136 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064504 B = 0.006157 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.975002 B = 4546.772488 C = 4618.776342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.288 4.288 4 C 0.084 3.916 5 C 0.131 3.869 6 N -0.546 5.546 7 C 0.046 3.954 8 C 0.207 3.793 9 C -0.523 4.523 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.971 3.029 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.275 1.275 17 N -0.324 5.324 18 N -0.472 5.472 19 H 0.448 0.552 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.157 0.843 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.020 0.980 29 H 0.004 0.996 30 H -0.028 1.028 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 -5.318 -3.741 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 C -0.318 4.318 4 C -0.083 4.083 5 C 0.001 3.999 6 N -0.271 5.271 7 C -0.102 4.102 8 C 0.081 3.919 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.200 1.200 17 N -0.148 5.148 18 N -0.183 5.183 19 H 0.294 0.706 20 H 0.116 0.884 21 H 0.115 0.885 22 H 0.107 0.893 23 H 0.174 0.826 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.022 0.978 30 H -0.011 1.011 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.242 -6.729 -3.568 18.850 hybrid contribution 0.273 1.137 0.216 1.189 sum -16.969 -5.592 -3.351 18.178 Atomic orbital electron populations 1.20606 0.83639 1.05374 1.04814 1.21725 0.96378 0.86614 0.98583 1.21394 0.90850 1.00528 1.18978 1.22124 0.95868 0.91481 0.98796 1.20320 0.92551 0.96014 0.90990 1.61933 1.03696 1.50995 1.10524 1.22163 0.94910 0.94941 0.98165 1.19418 0.85264 0.90457 0.96720 1.21463 1.03240 1.36417 0.95031 0.92204 1.25904 0.97047 0.94756 1.01856 1.70091 1.13863 1.39323 1.34171 0.85309 0.78135 0.77981 0.79018 1.18984 1.20404 1.20042 1.77290 0.97974 1.13346 1.26224 1.46349 1.03272 1.09182 1.59471 0.70599 0.88442 0.88473 0.89269 0.82559 0.91446 0.92557 0.91222 0.92590 0.96163 0.97830 1.01080 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.43 71.24 0.74 -0.18 16 2 C 0.10 2.13 7.21 41.40 0.30 2.43 16 3 C -0.29 -8.10 9.66 21.99 0.21 -7.88 16 4 C 0.08 3.01 5.93 43.10 0.26 3.27 16 5 C 0.13 5.30 5.53 85.56 0.47 5.78 16 6 N -0.55 -25.83 4.74 -931.69 -4.42 -30.25 16 7 C 0.05 1.92 9.14 127.69 1.17 3.08 16 8 C 0.21 11.62 4.72 85.56 0.40 12.03 16 9 C -0.52 -30.91 8.46 25.60 0.22 -30.69 16 10 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 11 C 0.00 0.13 5.46 84.65 0.46 0.60 16 12 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 13 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 N -0.32 -11.73 12.70 -47.38 -0.60 -12.33 16 18 N -0.47 -11.90 7.36 -48.00 -0.35 -12.25 16 19 H 0.45 7.82 8.96 -213.33 -1.91 5.91 16 20 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 21 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 22 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 23 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 24 H 0.07 2.86 7.93 -2.39 -0.02 2.84 16 25 H 0.06 2.10 8.12 -2.38 -0.02 2.08 16 26 H 0.07 2.54 6.55 -2.39 -0.02 2.53 16 27 H 0.06 2.47 6.76 -2.39 -0.02 2.46 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.00 0.22 7.93 -2.38 -0.02 0.20 16 30 H -0.03 -1.68 8.12 -2.39 -0.02 -1.70 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -72.38 265.91 0.38 -72.01 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -0.79 Total: 4.00 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.23 Total: -11.58 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -5.09 Total: -111.90 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.38 0.38 -72.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388635955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.415 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds