Wall clock time and date at job start Sun Mar 29 2020 22:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.46941 * 2 1 4 4 C 1.46899 * 111.00772 * 75.61671 * 3 2 1 5 5 C 1.50700 * 109.47504 * 199.60335 * 4 3 2 6 6 H 1.07997 * 119.99954 * 355.21190 * 5 4 3 7 7 C 1.37874 * 120.00192 * 175.21727 * 5 4 3 8 8 N 1.31513 * 120.00429 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47380 * 90.00381 * 9 7 5 11 11 H 1.48504 * 109.47168 * 210.00514 * 9 7 5 12 12 H 1.48501 * 109.47288 * 330.00341 * 9 7 5 13 13 C 1.46905 * 111.00111 * 199.57481 * 3 2 1 14 14 C 1.50695 * 109.47534 * 66.04000 * 13 3 2 15 15 C 1.39874 * 126.04094 * 269.70102 * 14 13 3 16 16 N 1.30839 * 108.20527 * 179.81575 * 15 14 13 17 17 N 1.40091 * 108.19890 * 0.43420 * 16 15 14 18 18 H 0.97007 * 126.03108 * 179.69772 * 17 16 15 19 19 C 1.34943 * 107.92848 * 359.72279 * 17 16 15 20 20 H 1.09005 * 109.46911 * 174.81838 * 1 2 3 21 21 H 1.08998 * 109.47448 * 294.81579 * 1 2 3 22 22 H 1.09001 * 109.46998 * 54.82212 * 1 2 3 23 23 H 1.08995 * 109.47315 * 239.99804 * 2 1 3 24 24 H 1.09003 * 109.46835 * 119.99508 * 2 1 3 25 25 H 1.09004 * 109.46913 * 79.59593 * 4 3 2 26 26 H 1.08998 * 109.46895 * 319.60259 * 4 3 2 27 27 H 0.96997 * 120.00287 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47359 * 186.04511 * 13 3 2 29 29 H 1.09010 * 109.46480 * 306.04243 * 13 3 2 30 30 H 1.07998 * 125.89789 * 359.97438 * 15 14 13 31 31 H 1.07995 * 126.12788 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8739 1.9950 1.3284 5 6 1.9176 3.4959 1.1995 6 1 2.1184 3.9499 0.2404 7 6 1.7014 4.2894 2.3061 8 7 1.7400 5.5991 2.1938 9 14 1.3537 3.5041 3.9649 10 1 2.6332 3.2796 4.6844 11 1 0.4863 4.4042 4.7667 12 1 0.6649 2.2041 3.7626 13 6 3.4134 1.4506 -0.4595 14 6 3.4841 1.0453 -1.9092 15 6 3.6811 -0.2525 -2.3922 16 7 3.6795 -0.2067 -3.6998 17 7 3.4911 1.1253 -4.0906 18 1 3.4521 1.4522 -5.0032 19 6 3.3740 1.8734 -2.9737 20 1 -0.3633 -1.0235 -0.0928 21 1 -0.3634 0.4313 0.9327 22 1 -0.3633 0.5921 -0.8400 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.6877 1.6617 1.9724 26 1 0.9205 1.6953 1.7632 27 1 1.5876 6.1574 2.9722 28 1 3.7850 2.4693 -0.3485 29 1 4.0249 0.7737 0.1373 30 1 3.8096 -1.1397 -1.7898 31 1 3.2195 2.9416 -2.9360 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388695180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:22 Heat of formation + Delta-G solvation = 78.563141 kcal Electronic energy + Delta-G solvation = -13701.061499 eV Core-core repulsion = 11405.352373 eV Total energy + Delta-G solvation = -2295.709126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.89153 -36.91832 -32.56896 -31.54097 -30.91294 -29.70029 -27.18125 -24.26565 -22.45050 -21.59750 -20.17508 -19.33597 -17.41259 -16.79280 -15.07352 -14.58280 -14.26405 -14.16193 -13.73435 -13.48401 -12.92172 -12.45569 -12.36772 -11.91470 -11.60014 -11.29837 -10.95156 -10.72043 -10.63637 -10.30135 -9.84786 -9.77885 -9.37688 -9.27241 -8.54138 -8.19713 -7.25827 -6.02034 -3.97985 2.16606 3.04802 3.14403 3.30348 3.38233 3.40192 4.45054 4.98500 5.06011 5.27039 5.31671 5.65589 5.73638 5.82096 5.94641 6.01494 6.10720 6.30023 6.45916 6.52238 6.61700 6.78500 6.89523 6.93603 7.01869 7.49683 7.69966 7.87443 8.02098 8.14645 8.72224 9.07358 9.60806 11.11332 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.008579 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.192097 B = 3263.139874 C = 3668.166585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.522 5.522 4 C 0.158 3.842 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.134 3.866 14 C -0.216 4.216 15 C 0.052 3.948 16 N -0.309 5.309 17 N -0.485 5.485 18 H 0.435 0.565 19 C 0.075 3.925 20 H 0.044 0.956 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.020 0.980 25 H -0.016 1.016 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.176 0.824 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -9.423 -7.339 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.247 5.247 4 C 0.032 3.968 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.005 3.995 14 C -0.228 4.228 15 C -0.135 4.135 16 N -0.132 5.132 17 N -0.193 5.193 18 H 0.278 0.722 19 C -0.072 4.072 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.038 0.962 25 H 0.001 0.999 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.193 0.807 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.134 -9.664 -8.596 13.109 hybrid contribution 0.119 -0.050 1.872 1.876 sum 2.253 -9.715 -6.724 12.027 Atomic orbital electron populations 1.21721 0.95830 0.99857 1.02534 1.22067 0.95825 0.90959 0.99317 1.62012 1.18651 1.15043 1.28951 1.20257 0.95474 0.96136 0.84924 1.21051 1.47514 0.88411 0.97058 0.90212 1.24896 0.95199 0.94702 0.98632 1.69888 1.50748 1.03396 1.30224 0.86900 0.78645 0.79673 0.84751 1.20387 1.21256 1.19165 1.20276 0.89610 1.01491 0.88078 1.20214 1.13446 0.92327 0.96779 1.23763 0.99813 0.98232 0.91699 1.77207 1.24945 0.96784 1.14258 1.46235 1.59174 1.05592 1.08313 0.72209 1.22468 1.00021 0.98646 0.86068 0.93704 0.92787 0.92185 0.91658 0.96177 0.99855 0.95121 0.92773 0.89150 0.95484 0.80712 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.95 37.16 0.37 -2.00 16 2 C 0.05 0.82 5.55 -3.83 -0.02 0.80 16 3 N -0.52 -10.76 4.35 -237.52 -1.03 -11.79 16 4 C 0.16 3.79 3.66 -4.98 -0.02 3.77 16 5 C -0.50 -14.00 9.16 -34.44 -0.32 -14.31 16 6 H 0.08 2.40 7.90 -52.49 -0.41 1.99 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 9 Si 0.87 21.39 27.57 -169.99 -4.69 16.71 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.31 6.41 56.52 0.36 -5.94 16 13 C 0.13 2.48 5.27 -4.98 -0.03 2.45 16 14 C -0.22 -3.47 5.01 -105.05 -0.53 -4.00 16 15 C 0.05 0.77 10.29 -17.36 -0.18 0.59 16 16 N -0.31 -4.66 12.70 30.63 0.39 -4.27 16 17 N -0.48 -6.27 7.36 30.44 0.22 -6.04 16 18 H 0.43 4.04 8.96 -182.60 -1.64 2.40 16 19 C 0.08 1.09 11.90 -17.23 -0.21 0.88 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.97 6.89 -51.93 -0.36 0.61 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.07 1.05 5.42 -51.93 -0.28 0.77 16 24 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 25 H -0.02 -0.39 7.67 -51.93 -0.40 -0.79 16 26 H 0.03 0.75 5.27 -51.93 -0.27 0.48 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.82 7.32 -51.93 -0.38 1.44 16 29 H 0.03 0.48 8.12 -51.92 -0.42 0.05 16 30 H 0.18 2.18 7.93 -52.49 -0.42 1.76 16 31 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -31.62 258.95 -6.89 -38.51 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.44 Total: -0.38 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.02 Total: -10.01 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.35 Total: -48.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.69 Total: 16.71 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.62 -6.89 -38.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388695180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.068 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds