Wall clock time and date at job start Sun Mar 29 2020 22:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.46941 * 2 1 4 4 C 1.46899 * 111.00772 * 75.61671 * 3 2 1 5 5 C 1.50700 * 109.47504 * 199.60335 * 4 3 2 6 6 H 1.07997 * 119.99954 * 355.21190 * 5 4 3 7 7 C 1.37874 * 120.00192 * 175.21727 * 5 4 3 8 8 N 1.31513 * 120.00429 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47380 * 90.00381 * 9 7 5 11 11 H 1.48504 * 109.47168 * 210.00514 * 9 7 5 12 12 H 1.48501 * 109.47288 * 330.00341 * 9 7 5 13 13 C 1.46905 * 111.00111 * 199.57481 * 3 2 1 14 14 C 1.50695 * 109.47534 * 66.04000 * 13 3 2 15 15 C 1.39874 * 126.04094 * 269.70102 * 14 13 3 16 16 N 1.30839 * 108.20527 * 179.81575 * 15 14 13 17 17 N 1.40091 * 108.19890 * 0.43420 * 16 15 14 18 18 H 0.97007 * 126.03108 * 179.69772 * 17 16 15 19 19 C 1.34943 * 107.92848 * 359.72279 * 17 16 15 20 20 H 1.09005 * 109.46911 * 174.81838 * 1 2 3 21 21 H 1.08998 * 109.47448 * 294.81579 * 1 2 3 22 22 H 1.09001 * 109.46998 * 54.82212 * 1 2 3 23 23 H 1.08995 * 109.47315 * 239.99804 * 2 1 3 24 24 H 1.09003 * 109.46835 * 119.99508 * 2 1 3 25 25 H 1.09004 * 109.46913 * 79.59593 * 4 3 2 26 26 H 1.08998 * 109.46895 * 319.60259 * 4 3 2 27 27 H 0.96997 * 120.00287 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47359 * 186.04511 * 13 3 2 29 29 H 1.09010 * 109.46480 * 306.04243 * 13 3 2 30 30 H 1.07998 * 125.89789 * 359.97438 * 15 14 13 31 31 H 1.07995 * 126.12788 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8739 1.9950 1.3284 5 6 1.9176 3.4959 1.1995 6 1 2.1184 3.9499 0.2404 7 6 1.7014 4.2894 2.3061 8 7 1.7400 5.5991 2.1938 9 14 1.3537 3.5041 3.9649 10 1 2.6332 3.2796 4.6844 11 1 0.4863 4.4042 4.7667 12 1 0.6649 2.2041 3.7626 13 6 3.4134 1.4506 -0.4595 14 6 3.4841 1.0453 -1.9092 15 6 3.6811 -0.2525 -2.3922 16 7 3.6795 -0.2067 -3.6998 17 7 3.4911 1.1253 -4.0906 18 1 3.4521 1.4522 -5.0032 19 6 3.3740 1.8734 -2.9737 20 1 -0.3633 -1.0235 -0.0928 21 1 -0.3634 0.4313 0.9327 22 1 -0.3633 0.5921 -0.8400 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.6877 1.6617 1.9724 26 1 0.9205 1.6953 1.7632 27 1 1.5876 6.1574 2.9722 28 1 3.7850 2.4693 -0.3485 29 1 4.0249 0.7737 0.1373 30 1 3.8096 -1.1397 -1.7898 31 1 3.2195 2.9416 -2.9360 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388695180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:22 Heat of formation + Delta-G solvation = 55.611725 kcal Electronic energy + Delta-G solvation = -13702.056747 eV Core-core repulsion = 11405.352373 eV Total energy + Delta-G solvation = -2296.704374 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.04846 -38.48994 -34.68337 -32.79832 -32.14418 -31.30292 -28.89546 -25.77205 -24.06725 -22.91486 -21.59851 -20.69001 -18.91748 -18.57822 -16.75538 -16.13911 -15.84167 -15.35584 -15.15014 -15.02047 -14.47667 -14.22926 -13.84241 -13.30883 -13.23631 -12.91205 -12.50231 -12.33414 -12.24219 -11.75740 -11.65701 -11.40406 -11.28910 -10.72517 -10.49315 -9.43024 -8.85263 -8.22139 -6.23257 1.02322 1.37704 1.39526 1.49628 1.84318 2.11959 2.39148 3.11103 3.50410 3.88781 4.14942 4.29444 4.41248 4.56580 4.64633 4.73724 4.78973 4.86374 4.99311 5.07782 5.13033 5.22010 5.36305 5.42974 5.65945 5.73445 6.11809 6.48343 6.53769 6.75269 6.80083 6.82862 7.39944 8.94422 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.008579 C = 0.007631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.192097 B = 3263.139874 C = 3668.166585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.538 5.538 4 C 0.169 3.831 5 C -0.505 4.505 6 H 0.041 0.959 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.250 1.250 13 C 0.141 3.859 14 C -0.239 4.239 15 C 0.055 3.945 16 N -0.323 5.323 17 N -0.470 5.470 18 H 0.451 0.549 19 C 0.079 3.921 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.029 0.971 25 H -0.014 1.014 26 H 0.030 0.970 27 H 0.265 0.735 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.198 0.802 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -11.529 -7.215 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 N -0.263 5.263 4 C 0.042 3.958 5 C -0.543 4.543 6 H 0.059 0.941 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.173 1.173 13 C 0.013 3.987 14 C -0.250 4.250 15 C -0.132 4.132 16 N -0.146 5.146 17 N -0.180 5.180 18 H 0.297 0.703 19 C -0.070 4.070 20 H 0.095 0.905 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.047 0.953 25 H 0.004 0.996 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.215 0.785 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.979 -11.796 -8.519 14.684 hybrid contribution 0.197 0.646 1.696 1.826 sum 2.176 -11.150 -6.822 13.252 Atomic orbital electron populations 1.21713 0.95257 1.01555 1.01134 1.22160 0.96267 0.89142 1.00578 1.61927 1.20222 1.17261 1.26885 1.19995 0.95296 0.93607 0.86935 1.21291 1.46668 0.90854 0.95533 0.94062 1.25785 0.95125 0.95100 1.02945 1.70041 1.52421 1.05119 1.31560 0.85811 0.78946 0.79292 0.79477 1.19363 1.20992 1.17343 1.20108 0.88546 1.00091 0.89972 1.20068 1.15748 0.93543 0.95686 1.24044 0.99075 0.98365 0.91692 1.77185 1.25411 0.97635 1.14403 1.46236 1.57994 1.04887 1.08894 0.70287 1.22646 0.98907 0.99139 0.86299 0.90476 0.94336 0.93381 0.89842 0.95279 0.99644 0.95187 0.92653 0.92075 0.94514 0.78535 0.79556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.95 71.98 0.72 -3.62 16 2 C 0.05 1.52 5.55 86.30 0.48 2.00 16 3 N -0.54 -21.77 4.35 -905.36 -3.94 -25.70 16 4 C 0.17 7.98 3.66 85.56 0.31 8.29 16 5 C -0.50 -28.75 9.16 25.60 0.23 -28.51 16 6 H 0.04 2.60 7.90 -2.91 -0.02 2.57 16 7 C 0.01 0.42 5.47 84.65 0.46 0.88 16 8 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.94 43.84 27.57 68.60 1.89 45.73 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.25 -10.86 6.41 99.48 0.64 -10.22 16 13 C 0.14 5.16 5.27 85.55 0.45 5.61 16 14 C -0.24 -7.37 5.01 -20.14 -0.10 -7.47 16 15 C 0.05 1.49 10.29 85.24 0.88 2.37 16 16 N -0.32 -9.00 12.70 -57.02 -0.72 -9.72 16 17 N -0.47 -11.25 7.36 -57.60 -0.42 -11.68 16 18 H 0.45 7.45 8.96 -213.32 -1.91 5.54 16 19 C 0.08 2.18 11.90 83.54 0.99 3.18 16 20 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 21 H 0.04 1.30 6.89 -2.39 -0.02 1.28 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.08 2.43 5.42 -2.39 -0.01 2.42 16 24 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 25 H -0.01 -0.66 7.67 -2.38 -0.02 -0.68 16 26 H 0.03 1.43 5.27 -2.39 -0.01 1.41 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.06 2.55 7.32 -2.39 -0.02 2.53 16 29 H 0.04 1.25 8.12 -2.38 -0.02 1.23 16 30 H 0.20 4.29 7.93 -2.91 -0.02 4.27 16 31 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -67.72 258.95 0.68 -67.04 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.86 Total: 10.32 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.43 Total: -17.28 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.78 Total: -105.81 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.89 Total: 45.73 kcal Total: -67.72 0.68 -67.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388695180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.650 kcal (2) G-P(sol) polarization free energy of solvation -67.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds