Wall clock time and date at job start Sun Mar 29 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33124 * 119.99879 * 2 1 4 4 C 1.46953 * 120.00114 * 172.13400 * 3 2 1 5 5 O 1.21660 * 119.99968 * 352.98463 * 4 3 2 6 6 N 1.34776 * 120.00168 * 173.26190 * 4 3 2 7 7 C 1.46504 * 119.99581 * 359.72289 * 6 4 3 8 8 C 1.36811 * 120.00157 * 179.72131 * 6 4 3 9 9 H 1.08000 * 120.00050 * 325.49334 * 8 6 4 10 10 C 1.39073 * 120.00167 * 145.49661 * 8 6 4 11 11 N 1.31349 * 120.00179 * 161.16485 * 10 8 6 12 12 Si 1.86797 * 119.99743 * 341.15918 * 10 8 6 13 13 H 1.48501 * 109.47137 * 90.19344 * 12 10 8 14 14 H 1.48507 * 109.47200 * 210.18928 * 12 10 8 15 15 H 1.48498 * 109.47508 * 330.19006 * 12 10 8 16 16 C 1.50696 * 120.00279 * 179.97438 * 2 1 3 17 17 C 1.53002 * 117.49667 * 1.42717 * 16 2 1 18 18 C 1.53001 * 117.49678 * 292.76966 * 16 2 1 19 19 H 1.09004 * 109.47430 * 90.00530 * 1 2 3 20 20 H 1.09003 * 109.47302 * 210.00370 * 1 2 3 21 21 H 1.08999 * 109.47533 * 330.00067 * 1 2 3 22 22 H 1.08006 * 119.99885 * 352.12538 * 3 2 1 23 23 H 1.09000 * 109.46969 * 84.64080 * 7 6 4 24 24 H 1.08997 * 109.46881 * 204.63121 * 7 6 4 25 25 H 1.08991 * 109.47319 * 324.63258 * 7 6 4 26 26 H 0.97000 * 120.00111 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.55303 * 147.10542 * 16 2 1 28 28 H 1.08995 * 117.50332 * 0.02562 * 17 16 2 29 29 H 1.09003 * 117.49541 * 145.02180 * 17 16 2 30 30 H 1.09001 * 117.49801 * 214.97830 * 18 16 2 31 31 H 1.09001 * 117.49981 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1725 1.1529 0.0000 4 6 3.6317 1.1590 0.1742 5 8 4.2162 0.1270 0.4453 6 7 4.3217 2.3087 0.0391 7 6 3.6178 3.5514 -0.2874 8 6 5.6795 2.3154 0.2068 9 1 6.1371 1.6603 0.9333 10 6 6.4705 3.1659 -0.5581 11 7 7.6913 3.4546 -0.1688 12 14 5.7968 3.8977 -2.1392 13 1 5.1338 5.1929 -1.8421 14 1 6.9107 4.1199 -3.0959 15 1 4.8103 2.9622 -2.7367 16 6 2.2605 -1.3050 0.0006 17 6 1.4387 -2.5952 -0.0326 18 6 2.1588 -2.1789 1.2524 19 1 -0.3634 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.6401 2.0838 -0.1282 23 1 3.2357 4.0037 0.6277 24 1 4.3066 4.2421 -0.7738 25 1 2.7876 3.3330 -0.9590 26 1 8.2429 4.0481 -0.7021 27 1 3.2107 -1.2995 -0.5335 28 1 0.3532 -2.5002 -0.0554 29 1 1.8485 -3.4387 -0.5884 30 1 3.0420 -2.7486 1.5415 31 1 1.5473 -1.8096 2.0756 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388786937.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:50 Heat of formation + Delta-G solvation = 4.418310 kcal Electronic energy + Delta-G solvation = -13819.078263 eV Core-core repulsion = 11487.861225 eV Total energy + Delta-G solvation = -2331.217038 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.70713 -38.68367 -36.61442 -34.37368 -33.91327 -29.31067 -28.10777 -26.76351 -24.03342 -23.15850 -21.39664 -19.08806 -18.93963 -18.06708 -17.43706 -16.49874 -16.09748 -15.55116 -14.78974 -14.69816 -14.20896 -14.16776 -13.87740 -13.63486 -13.42423 -13.00985 -12.69035 -12.35545 -12.23662 -12.11030 -11.75849 -11.58831 -11.19213 -10.98651 -10.10877 -9.78718 -9.60893 -8.52974 -6.12246 0.53920 1.16741 1.32931 1.43859 2.15407 2.43508 2.84059 3.01358 3.14093 3.72101 3.96528 4.09766 4.22179 4.29280 4.34145 4.47520 4.62161 4.71199 4.75247 4.80884 4.88264 4.99492 5.13356 5.27884 5.35805 5.48955 5.55550 5.81532 6.01878 6.59857 6.94587 7.31852 7.93880 8.64948 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047908 B = 0.009001 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.310037 B = 3109.871027 C = 3399.060337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 C -0.232 4.232 4 C 0.479 3.521 5 O -0.609 6.609 6 N -0.485 5.485 7 C 0.053 3.947 8 C -0.334 4.334 9 H 0.042 0.958 10 C 0.001 3.999 11 N -0.916 5.916 12 Si 0.966 3.034 13 H -0.232 1.232 14 H -0.290 1.290 15 H -0.262 1.262 16 C -0.141 4.141 17 C -0.156 4.156 18 C -0.167 4.167 19 H 0.095 0.905 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.154 0.846 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.281 0.719 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 -2.784 -3.211 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.017 4.017 3 C -0.252 4.252 4 C 0.272 3.728 5 O -0.495 6.495 6 N -0.206 5.206 7 C -0.088 4.088 8 C -0.462 4.462 9 H 0.060 0.940 10 C -0.200 4.200 11 N -0.554 5.554 12 Si 0.790 3.210 13 H -0.158 1.158 14 H -0.218 1.218 15 H -0.187 1.187 16 C -0.159 4.159 17 C -0.192 4.192 18 C -0.204 4.204 19 H 0.113 0.887 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.171 0.829 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.647 -3.150 -3.085 18.190 hybrid contribution 1.134 0.365 -0.274 1.223 sum -16.513 -2.785 -3.359 17.079 Atomic orbital electron populations 1.21024 0.87511 1.04441 1.04236 1.22138 0.97167 0.91994 0.90370 1.22586 0.91627 1.00316 1.10689 1.19333 0.89379 0.82703 0.81375 1.90583 1.72733 1.32794 1.53399 1.43712 1.05989 1.07240 1.63707 1.22347 0.97491 0.86821 1.02176 1.18699 0.82062 1.24525 1.20941 0.94049 1.26284 0.95430 0.97140 1.01121 1.69825 1.11070 1.35248 1.39278 0.85665 0.77923 0.79754 0.77682 1.15770 1.21758 1.18664 1.21257 1.00013 0.90294 1.04382 1.23240 0.99982 0.96575 0.99443 1.22796 1.02651 1.02831 0.92110 0.88691 0.89517 0.89641 0.82859 0.90761 0.92512 0.88557 0.90974 0.89775 0.85627 0.88271 0.90372 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.50 71.23 0.68 -1.42 16 2 C -0.01 -0.43 5.81 -17.60 -0.10 -0.54 16 3 C -0.23 -8.27 8.73 23.41 0.20 -8.06 16 4 C 0.48 23.91 7.46 86.53 0.65 24.56 16 5 O -0.61 -35.35 13.22 -4.22 -0.06 -35.40 16 6 N -0.48 -25.05 2.65 -663.21 -1.76 -26.81 16 7 C 0.05 2.07 8.52 127.77 1.09 3.15 16 8 C -0.33 -20.75 9.46 84.12 0.80 -19.96 16 9 H 0.04 3.01 7.84 -2.91 -0.02 2.99 16 10 C 0.00 0.08 5.36 84.97 0.46 0.53 16 11 N -0.92 -56.54 13.95 21.68 0.30 -56.24 16 12 Si 0.97 43.38 24.86 68.60 1.71 45.08 16 13 H -0.23 -8.89 6.48 99.48 0.64 -8.24 16 14 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 16 C -0.14 -4.85 4.29 -11.54 -0.05 -4.90 16 17 C -0.16 -3.73 9.79 30.62 0.30 -3.43 16 18 C -0.17 -5.03 10.24 30.62 0.31 -4.72 16 19 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 20 H 0.09 1.29 6.36 -2.39 -0.02 1.28 16 21 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 22 H 0.15 4.22 6.48 -2.91 -0.02 4.20 16 23 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.06 2.28 2.71 -2.39 -0.01 2.28 16 25 H 0.10 2.93 6.53 -2.39 -0.02 2.91 16 26 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.08 3.74 6.35 -2.39 -0.02 3.72 16 28 H 0.13 2.16 6.30 -2.39 -0.02 2.15 16 29 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -77.97 254.19 5.59 -72.38 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.06 Total: 15.76 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.33 Total: -14.78 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.45 Total: -83.05 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.06 Total: -35.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.71 Total: 45.08 kcal Total: -77.97 5.59 -72.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388786937.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.797 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds