Wall clock time and date at job start Sun Mar 29 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99548 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00627 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47202 * 90.00137 * 11 9 7 13 13 H 1.48501 * 109.47603 * 210.00337 * 11 9 7 14 14 H 1.48506 * 109.47086 * 329.99976 * 11 9 7 15 15 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 16 16 C 1.41383 * 126.58300 * 259.99920 * 15 2 1 17 17 C 1.34515 * 106.84521 * 179.97438 * 16 15 2 18 18 O 1.34307 * 108.41975 * 0.02562 * 17 16 15 19 19 C 1.34309 * 109.47300 * 359.76564 * 18 17 16 20 20 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 22 22 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 26 26 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 27 27 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 28 28 H 0.97002 * 119.99722 * 180.02562 * 10 9 7 29 29 H 1.07999 * 126.57785 * 0.02562 * 16 15 2 30 30 H 1.08004 * 125.79221 * 180.02562 * 17 16 15 31 31 H 1.08001 * 125.78634 * 180.24172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4059 -4.7514 8 1 2.3648 1.4384 -4.6356 9 6 3.0963 -0.0529 -5.9762 10 7 3.4563 -1.3101 -6.1172 11 14 3.1762 1.1107 -7.4352 12 1 4.5123 1.7572 -7.4802 13 1 2.9530 0.3479 -8.6896 14 1 2.1267 2.1521 -7.2959 15 6 2.0323 -0.7104 1.2304 16 6 2.4991 -0.1065 2.4205 17 6 2.8462 -1.1040 3.2535 18 8 2.6163 -2.2734 2.6343 19 6 2.1182 -2.0409 1.4089 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9173 -1.1204 -1.0288 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 3.5903 -0.9270 -3.3692 27 1 1.9183 -1.3563 -3.8030 28 1 3.7636 -1.6328 -6.9787 29 1 2.5636 0.9525 2.6224 30 1 3.2426 -0.9847 4.2511 31 1 1.8363 -2.7943 0.6883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388795548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:36 Heat of formation + Delta-G solvation = 1.160859 kcal Electronic energy + Delta-G solvation = -13182.225887 eV Core-core repulsion = 10850.867595 eV Total energy + Delta-G solvation = -2331.358292 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.48493 -36.90902 -33.69883 -32.40466 -30.66549 -28.82855 -27.96249 -24.36669 -22.63766 -21.57827 -20.40257 -19.57502 -17.41800 -16.27502 -15.86889 -15.28421 -14.58609 -14.43999 -14.09285 -13.50759 -12.81897 -12.76756 -12.32114 -12.20652 -12.01805 -11.46012 -11.08262 -11.00320 -10.78295 -10.52142 -9.95419 -9.67490 -9.32980 -9.13280 -8.45999 -8.34137 -7.83505 -5.98586 -4.01089 1.84168 2.65894 3.21696 3.32955 3.39095 3.42521 4.43843 4.65943 4.86477 5.07804 5.19932 5.37459 5.53848 5.68313 5.71495 5.91433 6.08769 6.20217 6.23410 6.34825 6.42609 6.50000 6.59093 7.00804 7.16609 7.52102 7.74814 7.84003 7.97734 8.09944 8.45023 9.06163 9.62664 11.12907 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062685 B = 0.005468 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.573593 B = 5119.384507 C = 5289.843950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.149 3.851 3 H 0.045 0.955 4 N -0.686 5.686 5 C 0.066 3.934 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.181 4.181 16 C -0.207 4.207 17 C -0.052 4.052 18 O -0.181 6.181 19 C -0.022 4.022 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.337 0.663 24 H 0.059 0.941 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.144 0.856 30 H 0.198 0.802 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 0.998 16.261 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.063 0.937 4 N -0.318 5.318 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.183 4.183 16 C -0.227 4.227 17 C -0.119 4.119 18 O -0.077 6.077 19 C -0.090 4.090 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.155 0.845 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.215 0.785 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.172 0.353 16.072 16.385 hybrid contribution 0.893 1.414 -0.692 1.810 sum -2.279 1.767 15.380 15.648 Atomic orbital electron populations 1.21747 0.94147 1.02205 1.00848 1.19845 0.95427 0.94842 0.85938 0.93663 1.60746 1.33237 1.34087 1.03721 1.22208 0.99629 0.93537 0.90839 1.19065 0.96227 0.95814 0.90109 1.21181 1.43899 0.96335 0.94604 0.92777 1.25000 0.95418 0.95090 0.98840 1.69978 1.44478 1.14348 1.24490 0.86587 0.78345 0.80878 0.82135 1.20718 1.21187 1.19879 1.20618 1.06297 0.93858 0.97517 1.21744 1.06106 1.00336 0.94489 1.23921 1.06207 0.82371 0.99447 1.84072 1.64088 1.33345 1.26173 1.23995 1.01903 0.97696 0.85387 0.93233 0.92258 0.92171 0.84483 0.92228 0.96654 0.96849 0.95619 0.93003 0.83803 0.78485 0.77592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.40 37.15 0.35 -1.51 16 2 C 0.15 2.29 3.08 -68.87 -0.21 2.08 16 3 H 0.05 0.72 7.80 -51.93 -0.40 0.31 16 4 N -0.69 -12.39 6.11 -107.96 -0.66 -13.05 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 11 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 15 C -0.18 -2.53 4.89 -104.75 -0.51 -3.04 16 16 C -0.21 -2.52 10.87 -39.70 -0.43 -2.96 16 17 C -0.05 -0.56 12.09 29.42 0.36 -0.21 16 18 O -0.18 -2.31 10.65 5.68 0.06 -2.25 16 19 C -0.02 -0.29 11.50 29.42 0.34 0.05 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.34 6.04 8.15 -39.29 -0.32 5.72 16 24 H 0.06 1.27 7.44 -51.93 -0.39 0.88 16 25 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.20 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.21 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -30.90 269.63 -5.93 -36.83 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.42 Total: 1.39 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.69 Total: -17.36 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.08 Total: -39.46 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.06 Total: -2.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.90 -5.93 -36.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388795548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.987 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds