Wall clock time and date at job start Sun Mar 29 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 5 5 C 1.46905 * 110.99870 * 84.99904 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 H 1.08010 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00736 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99548 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00627 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47202 * 90.00137 * 11 9 7 13 13 H 1.48501 * 109.47603 * 210.00337 * 11 9 7 14 14 H 1.48506 * 109.47086 * 329.99976 * 11 9 7 15 15 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 16 16 C 1.41383 * 126.58300 * 259.99920 * 15 2 1 17 17 C 1.34515 * 106.84521 * 179.97438 * 16 15 2 18 18 O 1.34307 * 108.41975 * 0.02562 * 17 16 15 19 19 C 1.34309 * 109.47300 * 359.76564 * 18 17 16 20 20 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 22 22 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.00901 * 111.00067 * 208.95080 * 4 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 26 26 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 27 27 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 28 28 H 0.97002 * 119.99722 * 180.02562 * 10 9 7 29 29 H 1.07999 * 126.57785 * 0.02562 * 16 15 2 30 30 H 1.08004 * 125.79221 * 180.02562 * 17 16 15 31 31 H 1.08001 * 125.78634 * 180.24172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4059 -4.7514 8 1 2.3648 1.4384 -4.6356 9 6 3.0963 -0.0529 -5.9762 10 7 3.4563 -1.3101 -6.1172 11 14 3.1762 1.1107 -7.4352 12 1 4.5123 1.7572 -7.4802 13 1 2.9530 0.3479 -8.6896 14 1 2.1267 2.1521 -7.2959 15 6 2.0323 -0.7104 1.2304 16 6 2.4991 -0.1065 2.4205 17 6 2.8462 -1.1040 3.2535 18 8 2.6163 -2.2734 2.6343 19 6 2.1182 -2.0409 1.4089 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9173 -1.1204 -1.0288 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 3.5903 -0.9270 -3.3692 27 1 1.9183 -1.3563 -3.8030 28 1 3.7636 -1.6328 -6.9787 29 1 2.5636 0.9525 2.6224 30 1 3.2426 -0.9847 4.2511 31 1 1.8363 -2.7943 0.6883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388795548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:36 Heat of formation + Delta-G solvation = -19.242619 kcal Electronic energy + Delta-G solvation = -13183.110648 eV Core-core repulsion = 10850.867595 eV Total energy + Delta-G solvation = -2332.243053 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.44146 -38.31681 -35.53877 -33.96207 -32.08632 -29.97739 -29.54242 -26.23971 -23.98274 -22.72026 -22.05009 -20.65736 -18.57508 -18.36489 -16.85897 -16.71054 -16.43200 -15.68626 -15.50651 -14.83958 -14.54144 -14.10528 -13.65550 -13.53889 -13.28279 -12.96963 -12.88635 -12.68230 -12.38323 -12.27358 -11.73474 -11.42299 -11.26432 -10.59432 -10.55920 -9.42449 -9.34078 -8.20299 -6.31898 0.90714 1.40713 1.42342 1.53554 1.68054 2.32844 2.40889 3.13261 3.29293 3.82480 4.11276 4.16112 4.43981 4.49450 4.52832 4.65920 4.72435 4.88090 5.00645 5.07142 5.10990 5.30037 5.37869 5.45615 5.58622 5.67251 5.78835 6.11106 6.20803 6.32860 6.51161 6.85229 7.37493 8.91948 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062685 B = 0.005468 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.573593 B = 5119.384507 C = 5289.843950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.043 0.957 4 N -0.687 5.687 5 C 0.085 3.915 6 C 0.032 3.968 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.197 4.197 16 C -0.225 4.225 17 C -0.038 4.038 18 O -0.189 6.189 19 C -0.032 4.032 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.337 0.663 24 H 0.061 0.939 25 H 0.016 0.984 26 H -0.010 1.010 27 H -0.004 1.004 28 H 0.264 0.736 29 H 0.159 0.841 30 H 0.240 0.760 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 2.154 17.187 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.042 3.958 3 H 0.061 0.939 4 N -0.319 5.319 5 C -0.044 4.044 6 C -0.005 4.005 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.792 3.208 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.198 4.198 16 C -0.245 4.245 17 C -0.105 4.105 18 O -0.085 6.085 19 C -0.100 4.100 20 H 0.088 0.912 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.155 0.845 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.008 0.992 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.177 0.823 30 H 0.256 0.744 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.239 1.513 17.020 17.391 hybrid contribution 0.924 1.017 -0.897 1.641 sum -2.315 2.530 16.123 16.484 Atomic orbital electron populations 1.21718 0.93213 1.02228 1.01368 1.19849 0.96096 0.94543 0.85322 0.93893 1.60673 1.33293 1.33698 1.04202 1.21821 0.99212 0.93165 0.90187 1.18913 0.94351 0.95127 0.92127 1.21615 1.44088 0.96964 0.95719 0.92173 1.25974 0.94723 0.96843 1.02140 1.70113 1.45185 1.16413 1.25491 0.85413 0.78869 0.78636 0.77913 1.19745 1.20663 1.18694 1.20591 1.07325 0.94302 0.97627 1.21988 1.06826 1.01566 0.94084 1.24724 1.04151 0.81180 1.00438 1.84088 1.64051 1.34375 1.25968 1.24101 1.02267 0.97704 0.85907 0.91180 0.93218 0.92395 0.84501 0.92095 0.96574 0.99193 0.98516 0.92727 0.82295 0.74427 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.40 71.98 0.68 -2.80 16 2 C 0.15 4.53 3.08 44.16 0.14 4.67 16 3 H 0.04 1.32 7.80 -2.39 -0.02 1.30 16 4 N -0.69 -24.96 6.11 -495.47 -3.03 -27.98 16 5 C 0.08 3.66 5.42 86.30 0.47 4.13 16 6 C 0.03 1.75 5.23 29.85 0.16 1.91 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 11 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 15 C -0.20 -5.26 4.89 -19.94 -0.10 -5.36 16 16 C -0.23 -5.00 10.87 22.19 0.24 -4.76 16 17 C -0.04 -0.72 12.09 66.97 0.81 0.09 16 18 O -0.19 -4.50 10.65 -2.58 -0.03 -4.52 16 19 C -0.03 -0.82 11.50 66.97 0.77 -0.05 16 20 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.05 1.43 7.45 -2.39 -0.02 1.41 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.34 12.25 8.15 -89.69 -0.73 11.52 16 24 H 0.06 2.60 7.44 -2.39 -0.02 2.58 16 25 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 30 H 0.24 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.21 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -66.06 269.63 3.49 -62.58 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.38 Total: 13.47 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.85 Total: -32.97 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.74 Total: -85.15 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.03 Total: -4.52 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.06 3.49 -62.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388795548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.333 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds