Wall clock time and date at job start Sun Mar 29 2020 21:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47030 * 179.97438 * 13 12 11 15 15 C 1.34671 * 126.59355 * 264.68756 * 14 13 12 16 16 N 1.34123 * 108.02020 * 179.87106 * 15 14 13 17 17 C 1.30501 * 109.25647 * 0.39984 * 16 15 14 18 18 N 1.35043 * 108.70143 * 359.75179 * 17 16 15 19 19 H 0.96995 * 126.39497 * 179.97438 * 18 17 16 20 20 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 22 22 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 23 23 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 24 24 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 25 25 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 26 26 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 27 27 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 28 28 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 29 29 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 30 30 H 1.07997 * 125.98511 * 0.03178 * 15 14 13 31 31 H 1.08008 * 125.64890 * 179.72940 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7435 -8.5140 -0.0031 15 6 3.2061 -9.1767 -1.0804 16 7 4.0895 -10.0926 -0.6563 17 6 4.1856 -10.0283 0.6435 18 7 3.3621 -9.0561 1.0911 19 1 3.2327 -8.7917 2.0153 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6245 -2.5571 0.8897 23 1 2.8717 -3.6045 0.8895 24 1 2.8717 -3.6044 -0.8906 25 1 0.8536 -5.0445 -0.8913 26 1 0.8530 -5.0451 0.8886 27 1 3.0693 -6.0363 -0.7832 28 1 1.1096 -7.4697 0.8884 29 1 1.1088 -7.4693 -0.8916 30 1 2.9182 -8.9998 -2.1061 31 1 4.8187 -10.6500 1.2594 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393541333.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:51 Heat of formation + Delta-G solvation = 16.626846 kcal Electronic energy + Delta-G solvation = -12769.005055 eV Core-core repulsion = 10470.610170 eV Total energy + Delta-G solvation = -2298.394885 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.89769 -37.82682 -35.55765 -33.65841 -33.11725 -30.87164 -28.17375 -25.82342 -23.83534 -22.46726 -22.02569 -21.59436 -18.83521 -18.43844 -16.86032 -16.58900 -16.14510 -15.52852 -15.33817 -15.03981 -14.52148 -14.36402 -14.20166 -13.51734 -13.21282 -13.14628 -12.64820 -12.46831 -12.27686 -11.53862 -11.41315 -11.17609 -10.92847 -10.92332 -10.54553 -9.54928 -9.27559 -8.20095 -6.31004 1.09831 1.40448 1.43328 1.51343 2.20442 2.33063 2.41413 3.13113 3.33336 3.81774 4.05790 4.17344 4.27479 4.40336 4.59194 4.62240 4.69479 4.73574 4.98573 5.09863 5.23537 5.31251 5.51846 5.75388 5.77051 5.86293 5.98611 6.26991 6.38105 6.59498 6.85860 7.13894 7.38234 8.91526 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.083778 B = 0.004310 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.136728 B = 6494.663549 C = 6624.515205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.072 3.928 12 N -0.690 5.690 13 C 0.133 3.867 14 C -0.017 4.017 15 C -0.044 4.044 16 N -0.539 5.539 17 C 0.190 3.810 18 N -0.551 5.551 19 H 0.433 0.567 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.007 1.007 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.344 0.656 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.171 0.829 31 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -17.123 2.582 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.322 5.322 13 C 0.004 3.996 14 C -0.134 4.134 15 C -0.193 4.193 16 N -0.259 5.259 17 C -0.095 4.095 18 N -0.155 5.155 19 H 0.274 0.726 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.162 0.838 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.551 -17.557 2.728 18.614 hybrid contribution -0.686 1.628 -0.058 1.767 sum 4.865 -15.929 2.670 16.868 Atomic orbital electron populations 1.70085 1.07760 1.27843 1.51650 1.25974 0.95782 1.03333 0.94704 0.85512 0.78299 0.78137 0.79179 1.19221 1.20749 1.19202 1.21688 0.93522 0.92531 1.50628 0.92365 1.18977 0.94438 0.92991 0.94916 1.21375 0.98038 0.93080 1.00627 1.21850 0.93853 0.89716 1.00231 1.60538 1.19995 1.01014 1.50658 1.20277 0.92085 0.84485 1.02792 1.21169 1.03205 1.01270 0.87788 1.22353 0.99892 0.97594 0.99412 1.70252 1.20317 1.24166 1.11142 1.25709 0.97561 0.94446 0.91756 1.43261 1.33258 1.28566 1.10384 0.72640 0.92745 0.98908 0.98831 0.93027 0.93300 0.95259 0.91416 0.83758 0.89508 0.91896 0.81138 0.73969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.79 5.41 30.59 0.17 -3.63 16 11 C 0.07 2.33 5.69 86.30 0.49 2.82 16 12 N -0.69 -18.22 6.49 -517.93 -3.36 -21.58 16 13 C 0.13 2.82 6.24 85.56 0.53 3.36 16 14 C -0.02 -0.36 6.75 40.95 0.28 -0.08 16 15 C -0.04 -1.05 11.79 83.52 0.98 -0.07 16 16 N -0.54 -13.40 11.25 -200.31 -2.25 -15.66 16 17 C 0.19 3.29 13.04 180.26 2.35 5.65 16 18 N -0.55 -9.22 6.15 -186.48 -1.15 -10.36 16 19 H 0.43 4.91 8.96 -92.71 -0.83 4.08 16 20 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 22 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.34 9.02 8.72 -89.69 -0.78 8.24 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 31 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -69.29 271.49 0.71 -68.59 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -0.49 Total: 10.40 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.65 Total: -21.17 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -6.48 Total: -104.21 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.29 0.71 -68.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393541333.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.213 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds