Wall clock time and date at job start Sun Mar 29 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99755 * 2 1 4 4 C 1.50702 * 109.46788 * 66.05021 * 3 2 1 5 5 H 1.07995 * 120.00371 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99941 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99574 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47213 * 59.99986 * 8 6 4 10 10 H 1.48498 * 109.47223 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47376 * 299.99875 * 8 6 4 12 12 C 1.46903 * 111.00292 * 236.05015 * 2 1 3 13 13 C 1.50703 * 109.46658 * 293.95319 * 12 2 1 14 14 C 1.34669 * 126.59045 * 94.95889 * 13 12 2 15 15 N 1.34128 * 108.01780 * 180.02562 * 14 13 12 16 16 C 1.30495 * 109.25774 * 359.72199 * 15 14 13 17 17 N 1.35045 * 108.69990 * 0.44365 * 16 15 14 18 18 C 1.46499 * 126.39849 * 179.82112 * 17 16 15 19 19 H 1.09000 * 109.46746 * 183.95144 * 1 2 3 20 20 H 1.09003 * 109.47200 * 303.94706 * 1 2 3 21 21 H 1.08998 * 109.47264 * 63.95290 * 1 2 3 22 22 H 1.09004 * 109.47115 * 186.04465 * 3 2 1 23 23 H 1.08994 * 109.47345 * 306.05044 * 3 2 1 24 24 H 0.97002 * 119.99601 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47385 * 173.95195 * 12 2 1 26 26 H 1.09002 * 109.46590 * 53.94735 * 12 2 1 27 27 H 1.08000 * 125.99191 * 0.02748 * 14 13 12 28 28 H 1.07997 * 125.65170 * 180.29145 * 16 15 14 29 29 H 1.09002 * 109.47391 * 269.69091 * 18 17 16 30 30 H 1.09001 * 109.46813 * 149.69147 * 18 17 16 31 31 H 1.09004 * 109.47041 * 29.69274 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3495 1.5286 7 7 2.7118 4.0019 0.6150 8 14 1.5817 4.1871 3.1378 9 1 2.1736 3.4302 4.2702 10 1 2.1139 5.5735 3.1379 11 1 0.1045 4.2235 3.2851 12 6 1.9955 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 0.5703 -2.8492 -1.5025 15 7 0.6135 -4.1338 -1.1191 16 6 1.6695 -4.3262 -0.3770 17 7 2.3327 -3.1560 -0.2559 18 6 3.5690 -2.9314 0.4973 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3634 0.5739 0.8525 21 1 -0.3634 0.4512 -0.9233 22 1 3.0797 1.3445 -0.1082 23 1 1.5610 1.9274 -0.8308 24 1 2.9857 4.9183 0.7767 25 1 3.0798 -0.6610 -1.1757 26 1 1.5611 -0.3871 -2.0628 27 1 -0.1870 -2.3982 -2.1265 28 1 1.9631 -5.2651 0.0686 29 1 3.3244 -2.6447 1.5201 30 1 4.1430 -2.1347 0.0240 31 1 4.1595 -3.8476 0.5080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393593729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:53 Heat of formation + Delta-G solvation = 66.001279 kcal Electronic energy + Delta-G solvation = -13670.010731 eV Core-core repulsion = 11373.756882 eV Total energy + Delta-G solvation = -2296.253849 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.78550 -36.54277 -33.72479 -32.67139 -30.22629 -27.10490 -26.74222 -26.39615 -23.64759 -21.12651 -20.71389 -19.39215 -16.81788 -16.25875 -15.61829 -14.84660 -14.61411 -13.94845 -13.84542 -13.53459 -13.10723 -12.64038 -12.58445 -12.09079 -11.90820 -11.52187 -11.11756 -10.89678 -10.74465 -10.49230 -9.99618 -9.65030 -9.33607 -9.24672 -8.48749 -8.07607 -7.31254 -6.07424 -4.09045 2.32417 3.08004 3.30493 3.34619 3.37422 3.42422 4.39267 4.88428 4.91417 5.02760 5.11044 5.28501 5.31634 5.60572 5.62575 5.72310 6.01496 6.07336 6.23527 6.34370 6.67809 6.78727 7.01330 7.20054 7.28094 7.45710 7.73966 8.00403 8.13339 8.32889 8.47711 8.98346 9.55361 11.03338 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052098 B = 0.007122 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.316983 B = 3930.609913 C = 4024.620492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.538 5.538 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.122 3.878 13 C 0.009 3.991 14 C -0.037 4.037 15 N -0.498 5.498 16 C 0.164 3.836 17 N -0.449 5.449 18 C 0.077 3.923 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.013 0.987 22 H 0.029 0.971 23 H -0.007 1.007 24 H 0.262 0.738 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.163 0.837 28 H 0.199 0.801 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -11.583 -1.600 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.263 5.263 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.007 4.007 13 C -0.107 4.107 14 C -0.185 4.185 15 N -0.217 5.217 16 C -0.118 4.118 17 N -0.132 5.132 18 C -0.066 4.066 19 H 0.068 0.932 20 H 0.092 0.908 21 H 0.031 0.969 22 H 0.047 0.953 23 H 0.011 0.989 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.180 0.820 28 H 0.216 0.784 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.043 -12.195 -1.323 12.310 hybrid contribution 0.194 1.560 0.402 1.623 sum 1.237 -10.635 -0.922 10.746 Atomic orbital electron populations 1.22230 0.88408 0.99987 1.00494 1.62148 1.07570 1.17621 1.38917 1.19746 0.95240 0.81322 0.96851 1.21107 1.34983 0.96955 1.01669 0.91930 1.24985 0.95251 0.97292 0.97023 1.69948 1.38275 1.11519 1.34095 0.86550 0.78777 0.78341 0.83679 1.20208 1.21307 1.20230 1.20446 1.00128 0.86065 0.94059 1.21371 0.96369 0.92945 1.00039 1.21964 0.99530 0.90486 1.06549 1.70191 1.18976 1.17986 1.14506 1.24754 0.92275 0.91039 1.03694 1.45215 1.21216 1.09094 1.37648 1.21995 0.84152 1.03062 0.97392 0.93241 0.90832 0.96883 0.95336 0.98907 0.92816 0.90817 0.93306 0.81966 0.78391 0.90007 0.89534 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.14 60.06 0.55 1.30 16 2 N -0.54 -11.46 4.74 -245.82 -1.17 -12.62 16 3 C 0.19 4.92 4.72 -4.97 -0.02 4.89 16 4 C -0.51 -14.09 8.46 -34.44 -0.29 -14.38 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 C 0.12 2.19 5.20 -4.97 -0.03 2.16 16 13 C 0.01 0.15 5.69 -81.60 -0.46 -0.31 16 14 C -0.04 -0.62 10.79 -17.81 -0.19 -0.81 16 15 N -0.50 -8.37 11.25 -14.67 -0.17 -8.54 16 16 C 0.16 2.30 12.56 -90.38 -1.14 1.17 16 17 N -0.45 -6.52 3.15 -121.36 -0.38 -6.90 16 18 C 0.08 0.86 11.01 59.85 0.66 1.52 16 19 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 20 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 23 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.07 1.27 7.17 -51.93 -0.37 0.90 16 26 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.00 7.30 -51.93 -0.38 0.62 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -31.58 264.25 -7.36 -38.94 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.32 Total: -2.68 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.02 Total: -3.00 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.98 Total: -53.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.58 -7.36 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393593729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.938 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds