Wall clock time and date at job start Sun Mar 29 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50711 * 119.99939 * 2 1 4 4 C 1.53002 * 109.46980 * 124.99895 * 3 2 1 5 5 C 1.50699 * 109.46755 * 180.02562 * 4 3 2 6 6 O 1.21289 * 120.00254 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99608 * 179.97438 * 5 4 3 8 8 C 1.37097 * 120.00053 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00393 * 224.29294 * 8 7 5 10 10 C 1.38952 * 119.99950 * 44.28576 * 8 7 5 11 11 N 1.31413 * 119.99710 * 18.21827 * 10 8 7 12 12 Si 1.86799 * 120.00260 * 198.22016 * 10 8 7 13 13 H 1.48498 * 109.46991 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47309 * 120.00075 * 12 10 8 15 15 H 1.48501 * 109.46749 * 240.00209 * 12 10 8 16 16 C 1.46503 * 120.00101 * 0.02562 * 7 5 4 17 17 C 1.53004 * 117.49694 * 183.22513 * 16 7 5 18 18 C 1.52998 * 117.49727 * 114.60208 * 16 7 5 19 19 H 1.07993 * 120.00376 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.99943 * 179.97438 * 1 2 3 21 21 H 1.08003 * 120.00364 * 179.97438 * 2 1 3 22 22 H 1.08993 * 109.46709 * 4.99639 * 3 2 1 23 23 H 1.08998 * 109.46755 * 244.99819 * 3 2 1 24 24 H 1.09000 * 109.46857 * 300.00401 * 4 3 2 25 25 H 1.09001 * 109.47031 * 60.00165 * 4 3 2 26 26 H 0.97001 * 120.00005 * 174.92946 * 11 10 8 27 27 H 1.09000 * 115.54764 * 328.92624 * 16 7 5 28 28 H 1.08995 * 117.49957 * 359.97438 * 17 16 7 29 29 H 1.08997 * 117.50055 * 145.02261 * 17 16 7 30 30 H 1.09010 * 117.49523 * 214.97334 * 18 16 7 31 31 H 1.08995 * 117.50657 * 359.97307 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7880 2.6385 1.1820 6 8 3.5695 3.4650 0.3215 7 7 4.7043 2.8876 2.1385 8 6 5.3897 4.0750 2.1386 9 1 6.4555 4.0832 2.3128 10 6 4.7132 5.2678 1.9142 11 7 3.4079 5.3196 2.0569 12 14 5.6591 6.7975 1.4098 13 1 7.1064 6.4772 1.3195 14 1 5.1721 7.2673 0.0879 15 1 5.4510 7.8642 2.4218 16 6 4.9686 1.8892 3.1775 17 6 5.9644 2.2614 4.2779 18 6 6.3566 1.2461 3.2025 19 1 -0.5400 0.9352 -0.0004 20 1 -0.5400 -0.9354 -0.0004 21 1 1.8500 -0.9353 0.0004 22 1 1.3585 2.1316 0.0895 23 1 2.6213 1.4026 -0.9314 24 1 2.4772 1.2356 2.1130 25 1 3.7399 0.5066 1.0921 26 1 2.9441 6.1674 1.9726 27 1 4.1196 1.2652 3.4566 28 1 6.4232 3.2488 4.2285 29 1 5.7707 1.8822 5.2813 30 1 6.4209 0.1990 3.4985 31 1 7.0731 1.5655 2.4457 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393713639.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:29 Heat of formation + Delta-G solvation = -6.163849 kcal Electronic energy + Delta-G solvation = -13880.209760 eV Core-core repulsion = 11548.533845 eV Total energy + Delta-G solvation = -2331.675915 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41517 -37.88621 -36.18785 -34.71238 -32.89729 -31.31100 -27.35848 -24.81224 -23.08765 -22.71535 -20.97530 -20.52500 -18.19972 -17.77541 -16.74691 -16.48089 -15.92514 -15.68176 -15.05455 -14.73063 -14.19672 -13.87586 -13.38729 -13.15063 -12.89431 -12.71058 -12.50510 -12.22946 -12.09024 -11.86148 -11.79736 -11.62451 -11.20321 -10.73228 -10.22556 -9.88777 -8.95463 -8.20215 -5.98179 1.33621 1.41453 1.44981 1.49335 2.26087 2.43316 3.10960 3.15797 3.38376 3.95165 4.11043 4.16891 4.28343 4.36415 4.40374 4.52704 4.60119 4.77854 4.91090 5.01568 5.08453 5.14114 5.31536 5.34735 5.47101 5.50863 5.75680 5.98951 6.21258 7.04978 7.23046 7.72924 8.39674 8.88915 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.011306 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.431508 B = 2475.878650 C = 3276.547523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.072 4.072 4 C -0.112 4.112 5 C 0.462 3.538 6 O -0.592 6.592 7 N -0.448 5.448 8 C -0.356 4.356 9 H 0.076 0.924 10 C 0.018 3.982 11 N -0.874 5.874 12 Si 0.970 3.030 13 H -0.258 1.258 14 H -0.296 1.296 15 H -0.272 1.272 16 C 0.044 3.956 17 C -0.174 4.174 18 C -0.179 4.179 19 H 0.084 0.916 20 H 0.123 0.877 21 H 0.133 0.867 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.258 0.742 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 -11.212 2.246 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C -0.110 4.110 4 C -0.152 4.152 5 C 0.252 3.748 6 O -0.474 6.474 7 N -0.169 5.169 8 C -0.484 4.484 9 H 0.094 0.906 10 C -0.187 4.187 11 N -0.510 5.510 12 Si 0.795 3.205 13 H -0.181 1.181 14 H -0.223 1.223 15 H -0.197 1.197 16 C -0.060 4.060 17 C -0.211 4.211 18 C -0.217 4.217 19 H 0.102 0.898 20 H 0.141 0.859 21 H 0.150 0.850 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.067 0.933 27 H 0.144 0.856 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.202 -10.676 1.752 10.821 hybrid contribution 0.232 1.332 -0.260 1.377 sum 0.030 -9.344 1.492 9.463 Atomic orbital electron populations 1.24014 0.95810 1.02384 1.01012 1.23010 0.96288 0.97624 0.99991 1.20358 0.97364 0.95650 0.97590 1.21452 0.98385 0.95303 1.00041 1.20982 0.82963 0.89149 0.81720 1.90467 1.66916 1.50037 1.39958 1.43083 1.37230 1.14419 1.22150 1.19131 0.91865 0.83887 1.53507 0.90615 1.26089 0.95791 1.01761 0.95088 1.69949 1.09563 1.26187 1.45257 0.85260 0.79132 0.78669 0.77443 1.18128 1.22252 1.19704 1.22024 0.93879 0.95931 0.94214 1.23118 1.03132 1.00087 0.94769 1.23323 0.98046 0.98952 1.01413 0.89800 0.85901 0.84966 0.94142 0.92303 0.89660 0.87767 0.93269 0.85571 0.90272 0.86419 0.85522 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.74 14.32 67.79 0.97 -3.77 16 2 C -0.15 -4.04 9.52 25.66 0.24 -3.80 16 3 C -0.07 -2.62 4.95 29.85 0.15 -2.47 16 4 C -0.11 -4.25 4.30 29.85 0.13 -4.13 16 5 C 0.46 24.20 6.97 87.66 0.61 24.81 16 6 O -0.59 -36.82 13.74 -3.06 -0.04 -36.87 16 7 N -0.45 -22.94 2.83 -613.12 -1.74 -24.68 16 8 C -0.36 -20.14 7.92 84.04 0.67 -19.47 16 9 H 0.08 4.15 7.26 -2.91 -0.02 4.13 16 10 C 0.02 1.08 4.38 84.93 0.37 1.45 16 11 N -0.87 -54.62 11.74 21.66 0.25 -54.36 16 12 Si 0.97 46.88 29.59 68.60 2.03 48.91 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 C 0.04 1.72 5.87 44.99 0.26 1.98 16 17 C -0.17 -5.96 9.80 30.60 0.30 -5.66 16 18 C -0.18 -5.60 10.36 30.60 0.32 -5.29 16 19 H 0.08 2.22 7.84 -2.91 -0.02 2.19 16 20 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 21 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 22 H 0.04 1.70 7.75 -2.39 -0.02 1.68 16 23 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 24 H 0.09 3.03 7.56 -2.39 -0.02 3.01 16 25 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 26 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 27 H 0.13 4.20 6.96 -2.39 -0.02 4.18 16 28 H 0.08 3.17 6.72 -2.39 -0.02 3.15 16 29 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -73.50 266.77 5.62 -67.88 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.09 Total: 15.45 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.02 Total: -16.34 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.48 Total: -79.04 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.04 Total: -36.87 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -73.50 5.62 -67.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393713639.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds