Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47202 * 170.59235 * 3 2 1 5 5 C 1.36938 * 120.00192 * 87.70051 * 4 3 2 6 6 H 1.07995 * 119.99872 * 212.55638 * 5 4 3 7 7 C 1.38812 * 120.00062 * 32.55198 * 5 4 3 8 8 N 1.31623 * 119.99657 * 32.64140 * 7 5 4 9 9 Si 1.86791 * 120.00157 * 212.64132 * 7 5 4 10 10 H 1.48503 * 109.47039 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47035 * 60.00216 * 9 7 5 12 12 H 1.48500 * 109.47326 * 300.00001 * 9 7 5 13 13 C 1.46502 * 119.99814 * 267.70421 * 4 3 2 14 14 C 1.53001 * 109.46717 * 264.33792 * 13 4 3 15 15 H 1.09000 * 110.43370 * 303.00001 * 14 13 4 16 16 C 1.54817 * 110.48552 * 180.31885 * 14 13 4 17 17 C 1.54995 * 102.09141 * 220.44450 * 16 14 13 18 18 O 1.44385 * 103.49074 * 37.02016 * 17 16 14 19 19 C 1.43747 * 106.97425 * 319.93994 * 18 17 16 20 20 H 4.40642 * 5.51458 * 180.02562 * 4 1 2 21 21 H 1.08992 * 109.47431 * 50.59047 * 3 2 1 22 22 H 1.09005 * 109.46946 * 290.59063 * 3 2 1 23 23 H 0.96997 * 120.00065 * 5.85449 * 8 7 5 24 24 H 1.08996 * 109.46904 * 24.33826 * 13 4 3 25 25 H 1.08997 * 109.47227 * 144.33656 * 13 4 3 26 26 H 1.09005 * 110.90483 * 338.64032 * 16 14 13 27 27 H 1.08999 * 110.90822 * 102.23865 * 16 14 13 28 28 H 1.09001 * 110.61631 * 278.51813 * 17 16 14 29 29 H 1.08994 * 110.75268 * 155.58663 * 17 16 14 30 30 H 1.09001 * 109.87676 * 267.09016 * 19 18 17 31 31 H 1.09004 * 109.87561 * 145.93727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3635 -0.2258 5 6 3.3167 2.2098 0.8351 6 1 3.1569 3.2709 0.7132 7 6 3.7076 1.7038 2.0672 8 7 4.4907 0.6476 2.1264 9 14 3.1221 2.5219 3.6411 10 1 3.6761 1.7957 4.8121 11 1 1.6384 2.4886 3.6940 12 1 3.5870 3.9320 3.6687 13 6 3.4256 1.8210 -1.5866 14 6 4.9181 1.6457 -1.8743 15 1 5.5136 2.1846 -1.1373 16 6 5.2544 2.1302 -3.3058 17 6 6.2594 1.0522 -3.7856 18 8 5.7448 -0.1680 -3.2102 19 6 5.2938 0.1513 -1.8832 20 1 -1.0502 -0.0003 0.0002 21 1 3.0096 -0.6515 -0.7939 22 1 3.0095 -0.3606 0.9621 23 1 4.8635 0.2740 1.3126 24 1 2.8467 1.2337 -2.2993 25 1 3.1584 2.8735 -1.6812 26 1 4.3631 2.1378 -3.9333 27 1 5.7212 3.1149 -3.2836 28 1 7.2592 1.2636 -3.4062 29 1 6.2684 0.9895 -4.8737 30 1 6.0930 -0.0342 -1.1655 31 1 4.4209 -0.4518 -1.6333 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393719276.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = 7.981963 kcal Electronic energy + Delta-G solvation = -14036.190942 eV Core-core repulsion = 11705.128436 eV Total energy + Delta-G solvation = -2331.062507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49796 -38.05354 -34.31093 -34.00870 -32.17965 -30.09682 -28.43893 -26.76399 -24.02855 -22.93930 -21.36822 -19.66709 -18.79189 -17.46383 -17.02811 -16.32215 -15.99805 -15.87110 -15.50414 -15.11987 -14.29435 -13.93641 -13.65131 -13.41372 -13.02988 -12.62784 -12.47180 -12.18827 -11.93392 -11.81660 -11.71067 -11.54808 -11.17740 -10.88753 -10.65688 -10.38117 -9.00617 -8.30189 -5.49424 1.55435 1.62139 1.81564 1.94963 2.05251 2.63530 3.01947 3.12797 3.50042 3.77108 3.80294 3.95001 3.99497 4.24375 4.40941 4.49060 4.50772 4.78314 4.82679 4.86143 4.93458 5.01641 5.09116 5.14343 5.26567 5.29035 5.86917 5.95296 6.35545 6.85357 7.01717 7.69120 8.13766 8.90510 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.010750 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.590088 B = 2604.100852 C = 3053.740096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.215 4.215 3 C 0.225 3.775 4 N -0.596 5.596 5 C -0.362 4.362 6 H 0.042 0.958 7 C -0.055 4.055 8 N -0.915 5.915 9 Si 1.096 2.904 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.159 3.841 14 C -0.132 4.132 15 H 0.057 0.943 16 C -0.140 4.140 17 C 0.043 3.957 18 O -0.402 6.402 19 C 0.062 3.938 20 H 0.248 0.752 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.260 0.740 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.038 0.962 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 1.510 -9.175 9.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.218 4.218 3 C 0.100 3.900 4 N -0.316 5.316 5 C -0.491 4.491 6 H 0.060 0.940 7 C -0.255 4.255 8 N -0.554 5.554 9 Si 0.922 3.078 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.034 3.966 14 C -0.153 4.153 15 H 0.075 0.925 16 C -0.178 4.178 17 C -0.033 4.033 18 O -0.321 6.321 19 C -0.015 4.015 20 H 0.264 0.736 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.056 0.944 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.488 1.226 -7.627 7.740 hybrid contribution -0.041 0.300 -1.218 1.255 sum -0.529 1.525 -8.845 8.991 Atomic orbital electron populations 1.25597 0.96562 1.00869 1.02033 1.25268 0.96788 1.00022 0.99709 1.18121 0.82949 0.87603 1.01320 1.43997 1.73473 1.11304 1.02868 1.19862 1.45977 0.91224 0.92083 0.94050 1.26879 0.95255 0.99716 1.03664 1.70903 1.26409 1.26957 1.31146 0.83109 0.76006 0.75393 0.73314 1.21503 1.21493 1.19965 1.21015 0.92224 0.98055 0.85281 1.22981 0.99667 0.95156 0.97494 0.92453 1.23143 1.00331 0.99971 0.94388 1.23744 0.96587 0.82937 1.00030 1.88792 1.81432 1.33285 1.28614 1.23097 0.98217 0.96331 0.83810 0.73597 0.90859 0.91226 0.92968 0.92870 0.93804 0.89708 0.88913 0.91960 0.86560 0.94372 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.75 19.25 74.32 1.43 -7.32 16 2 C -0.22 -9.65 13.67 31.13 0.43 -9.22 16 3 C 0.23 10.70 5.04 84.57 0.43 11.13 16 4 N -0.60 -29.15 2.10 -712.56 -1.49 -30.64 16 5 C -0.36 -19.85 9.33 84.03 0.78 -19.06 16 6 H 0.04 2.33 8.01 -2.91 -0.02 2.31 16 7 C -0.06 -3.07 4.71 84.86 0.40 -2.67 16 8 N -0.91 -53.44 12.17 21.65 0.26 -53.18 16 9 Si 1.10 50.67 30.02 68.60 2.06 52.73 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.16 6.51 4.94 86.38 0.43 6.94 16 14 C -0.13 -4.87 3.28 -9.80 -0.03 -4.90 16 15 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.14 -3.81 6.71 31.90 0.21 -3.60 16 17 C 0.04 1.12 7.72 72.66 0.56 1.68 16 18 O -0.40 -13.91 11.52 -148.98 -1.72 -15.62 16 19 C 0.06 2.36 7.16 72.35 0.52 2.88 16 20 H 0.25 6.57 7.80 -4.41 -0.03 6.54 16 21 H 0.07 3.17 5.67 -2.39 -0.01 3.15 16 22 H 0.07 3.75 5.45 -2.38 -0.01 3.74 16 23 H 0.26 15.27 7.56 -92.71 -0.70 14.57 16 24 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 25 H 0.04 1.79 8.09 -2.39 -0.02 1.77 16 26 H 0.08 2.13 7.87 -2.38 -0.02 2.11 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.99 4.78 -2.39 -0.01 2.98 16 Total: -1.00 -63.38 262.88 5.44 -57.95 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.17 Total: 12.92 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.15 Total: -24.15 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.23 Total: -83.82 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.72 Total: -15.62 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.06 Total: 52.73 kcal Total: -63.38 5.44 -57.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393719276.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.929 kcal (2) G-P(sol) polarization free energy of solvation -63.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds