Wall clock time and date at job start Sun Mar 29 2020 21:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47549 * 324.65145 * 3 2 1 5 5 C 1.36928 * 119.99990 * 264.23864 * 4 3 2 6 6 H 1.08006 * 120.00030 * 196.92597 * 5 4 3 7 7 C 1.38817 * 120.00338 * 16.92804 * 5 4 3 8 8 N 1.31616 * 119.99862 * 22.11108 * 7 5 4 9 9 Si 1.86803 * 120.00160 * 202.11553 * 7 5 4 10 10 H 1.48495 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46955 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.47184 * 239.99536 * 9 7 5 13 13 C 1.46499 * 119.99677 * 84.23407 * 4 3 2 14 14 C 1.53001 * 109.47108 * 269.99942 * 13 4 3 15 15 H 1.09002 * 110.80420 * 51.37928 * 14 13 4 16 16 C 1.54818 * 110.90832 * 175.00120 * 14 13 4 17 17 C 1.54099 * 104.18658 * 139.11567 * 16 14 13 18 18 O 1.43738 * 107.29356 * 2.03120 * 17 16 14 19 19 C 1.44381 * 106.97889 * 333.48741 * 18 17 16 20 20 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 21 21 H 1.09001 * 109.47040 * 204.65078 * 3 2 1 22 22 H 1.09001 * 109.47187 * 84.64904 * 3 2 1 23 23 H 0.96995 * 120.00307 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.47034 * 150.00502 * 13 4 3 25 25 H 1.08998 * 109.47476 * 30.00622 * 13 4 3 26 26 H 1.09005 * 110.48233 * 20.43950 * 16 14 13 27 27 H 1.08997 * 110.48859 * 257.79497 * 16 14 13 28 28 H 1.09002 * 109.87991 * 242.60797 * 17 16 14 29 29 H 1.08997 * 109.87485 * 121.45787 * 17 16 14 30 30 H 1.08998 * 110.61633 * 158.55845 * 19 18 17 31 31 H 1.08994 * 110.61318 * 281.55863 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.1257 0.7991 5 6 3.4753 -0.9371 2.1119 6 1 4.0814 -1.6703 2.6234 7 6 3.0414 0.1965 2.7855 8 7 1.9872 0.8556 2.3535 9 14 3.9538 0.7866 4.3050 10 1 5.0953 -0.1222 4.5811 11 1 4.4609 2.1632 4.0745 12 1 3.0301 0.7877 5.4678 13 6 3.2595 -2.4539 0.1936 14 6 1.9499 -3.2233 0.3778 15 1 1.1010 -2.6294 0.0390 16 6 2.0006 -4.5844 -0.3581 17 6 1.3250 -5.5669 0.6181 18 8 0.8962 -4.8072 1.7605 19 6 1.7663 -3.6588 1.8539 20 1 -1.0498 -0.0002 0.0004 21 1 3.0088 0.9348 0.4286 22 1 3.0093 -0.0950 -1.0232 23 1 1.6843 1.6479 2.8240 24 1 4.0716 -2.9982 0.6756 25 1 3.4732 -2.3496 -0.8702 26 1 3.0335 -4.8799 -0.5429 27 1 1.4442 -4.5332 -1.2939 28 1 2.0380 -6.3311 0.9277 29 1 0.4643 -6.0328 0.1384 30 1 1.2935 -2.8651 2.4323 31 1 2.7238 -3.9376 2.2937 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393719280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:38 Heat of formation + Delta-G solvation = 31.089072 kcal Electronic energy + Delta-G solvation = -14154.942772 eV Core-core repulsion = 11824.882265 eV Total energy + Delta-G solvation = -2330.060507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.86183 -36.06489 -32.54566 -31.54692 -30.51344 -28.66145 -26.03582 -25.33216 -22.31368 -21.32342 -19.68393 -17.45793 -16.56519 -15.81957 -15.32104 -14.67355 -14.51490 -13.72076 -13.56311 -12.99272 -12.90091 -12.20484 -11.62762 -11.45020 -11.10427 -11.02158 -10.83082 -10.80080 -10.31417 -10.15154 -10.09949 -9.78466 -9.12385 -8.87308 -8.75515 -8.40139 -7.01493 -5.79912 -3.20482 3.36222 3.45403 3.46662 4.18138 4.39969 4.52274 4.54505 5.11922 5.24708 5.35119 5.40859 5.65077 5.78269 5.85609 5.87641 6.10152 6.15783 6.23490 6.37947 6.49160 6.56084 6.70516 6.80777 7.04813 7.23380 7.43512 7.45100 7.74391 8.27281 9.09765 9.20527 9.76695 10.23056 11.23644 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.011643 C = 0.009999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.714059 B = 2404.370207 C = 2799.689381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.093 4.093 3 C 0.267 3.733 4 N -0.587 5.587 5 C -0.263 4.263 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.159 3.841 14 C -0.139 4.139 15 H 0.082 0.918 16 C -0.154 4.154 17 C 0.049 3.951 18 O -0.392 6.392 19 C 0.068 3.932 20 H 0.189 0.811 21 H 0.097 0.903 22 H 0.036 0.964 23 H 0.254 0.746 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -6.737 -5.328 8.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.096 4.096 3 C 0.141 3.859 4 N -0.306 5.306 5 C -0.392 4.392 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.031 3.969 14 C -0.160 4.160 15 H 0.100 0.900 16 C -0.192 4.192 17 C -0.028 4.028 18 O -0.312 6.312 19 C -0.007 4.007 20 H 0.206 0.794 21 H 0.114 0.886 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.975 -6.634 -5.095 8.421 hybrid contribution 0.055 0.404 0.871 0.962 sum 1.030 -6.229 -4.224 7.597 Atomic orbital electron populations 1.24170 0.95340 1.05093 1.07608 1.24302 0.95283 0.96005 0.94037 1.17825 0.82854 0.93277 0.91931 1.44197 1.74684 1.02418 1.09316 1.19205 1.26164 1.06295 0.87503 0.90727 1.24894 0.96464 1.00080 0.98108 1.70135 1.21439 1.20127 1.41283 0.86313 0.79561 0.78670 0.82787 1.20325 1.21580 1.21917 1.20890 0.93381 0.86370 0.96212 1.23480 1.02691 0.94845 0.95026 0.89956 1.23000 1.00853 0.96296 0.99093 1.23030 0.98306 0.94296 0.87207 1.88820 1.56416 1.38728 1.47198 1.23510 0.93527 0.86611 0.97085 0.79417 0.88567 0.94653 0.93576 0.93159 0.93871 0.91175 0.91422 0.93345 0.90994 0.88203 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.93 19.18 29.55 0.57 -6.36 16 2 C -0.09 -2.24 10.39 -37.13 -0.39 -2.63 16 3 C 0.27 6.18 5.45 -6.83 -0.04 6.14 16 4 N -0.59 -13.75 2.49 -176.57 -0.44 -14.19 16 5 C -0.26 -6.75 8.96 -15.06 -0.13 -6.89 16 6 H 0.07 1.90 7.90 -52.48 -0.41 1.48 16 7 C 0.00 0.10 4.85 -17.43 -0.08 0.02 16 8 N -0.89 -24.70 9.49 55.49 0.53 -24.17 16 9 Si 0.90 21.18 29.61 -169.99 -5.03 16.14 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.16 3.09 5.11 -4.04 -0.02 3.07 16 14 C -0.14 -2.64 3.26 -88.61 -0.29 -2.93 16 15 H 0.08 1.78 6.91 -51.93 -0.36 1.42 16 16 C -0.15 -2.32 6.60 -25.20 -0.17 -2.48 16 17 C 0.05 0.75 7.70 37.73 0.29 1.04 16 18 O -0.39 -7.69 11.52 -35.23 -0.41 -8.10 16 19 C 0.07 1.39 6.45 38.21 0.25 1.64 16 20 H 0.19 3.68 7.80 -54.10 -0.42 3.25 16 21 H 0.10 2.44 6.42 -51.93 -0.33 2.10 16 22 H 0.04 0.72 7.98 -51.93 -0.41 0.30 16 23 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 25 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16 26 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.36 8.14 -51.93 -0.42 1.93 16 31 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 261.88 15.07 3.95 3.95 Total: -1.00 -28.60 261.88 -5.83 -34.43 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.41 Total: 1.32 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.01 Total: -9.37 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.09 Total: -38.36 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.41 Total: -8.10 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.60 -5.83 -34.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393719280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.516 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds