Wall clock time and date at job start Sun Mar 29 2020 21:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47549 * 324.65145 * 3 2 1 5 5 C 1.36928 * 119.99990 * 264.23864 * 4 3 2 6 6 H 1.08006 * 120.00030 * 196.92597 * 5 4 3 7 7 C 1.38817 * 120.00338 * 16.92804 * 5 4 3 8 8 N 1.31616 * 119.99862 * 22.11108 * 7 5 4 9 9 Si 1.86803 * 120.00160 * 202.11553 * 7 5 4 10 10 H 1.48495 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46955 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.47184 * 239.99536 * 9 7 5 13 13 C 1.46499 * 119.99677 * 84.23407 * 4 3 2 14 14 C 1.53001 * 109.47108 * 269.99942 * 13 4 3 15 15 H 1.09002 * 110.80420 * 51.37928 * 14 13 4 16 16 C 1.54818 * 110.90832 * 175.00120 * 14 13 4 17 17 C 1.54099 * 104.18658 * 139.11567 * 16 14 13 18 18 O 1.43738 * 107.29356 * 2.03120 * 17 16 14 19 19 C 1.44381 * 106.97889 * 333.48741 * 18 17 16 20 20 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 21 21 H 1.09001 * 109.47040 * 204.65078 * 3 2 1 22 22 H 1.09001 * 109.47187 * 84.64904 * 3 2 1 23 23 H 0.96995 * 120.00307 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.47034 * 150.00502 * 13 4 3 25 25 H 1.08998 * 109.47476 * 30.00622 * 13 4 3 26 26 H 1.09005 * 110.48233 * 20.43950 * 16 14 13 27 27 H 1.08997 * 110.48859 * 257.79497 * 16 14 13 28 28 H 1.09002 * 109.87991 * 242.60797 * 17 16 14 29 29 H 1.08997 * 109.87485 * 121.45787 * 17 16 14 30 30 H 1.08998 * 110.61633 * 158.55845 * 19 18 17 31 31 H 1.08994 * 110.61318 * 281.55863 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.1257 0.7991 5 6 3.4753 -0.9371 2.1119 6 1 4.0814 -1.6703 2.6234 7 6 3.0414 0.1965 2.7855 8 7 1.9872 0.8556 2.3535 9 14 3.9538 0.7866 4.3050 10 1 5.0953 -0.1222 4.5811 11 1 4.4609 2.1632 4.0745 12 1 3.0301 0.7877 5.4678 13 6 3.2595 -2.4539 0.1936 14 6 1.9499 -3.2233 0.3778 15 1 1.1010 -2.6294 0.0390 16 6 2.0006 -4.5844 -0.3581 17 6 1.3250 -5.5669 0.6181 18 8 0.8962 -4.8072 1.7605 19 6 1.7663 -3.6588 1.8539 20 1 -1.0498 -0.0002 0.0004 21 1 3.0088 0.9348 0.4286 22 1 3.0093 -0.0950 -1.0232 23 1 1.6843 1.6479 2.8240 24 1 4.0716 -2.9982 0.6756 25 1 3.4732 -2.3496 -0.8702 26 1 3.0335 -4.8799 -0.5429 27 1 1.4442 -4.5332 -1.2939 28 1 2.0380 -6.3311 0.9277 29 1 0.4643 -6.0328 0.1384 30 1 1.2935 -2.8651 2.4323 31 1 2.7238 -3.9376 2.2937 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393719280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:38 Heat of formation + Delta-G solvation = 14.096836 kcal Electronic energy + Delta-G solvation = -14155.679611 eV Core-core repulsion = 11824.882265 eV Total energy + Delta-G solvation = -2330.797346 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32077 -37.82906 -34.19607 -33.41392 -32.19898 -30.10875 -27.89998 -27.04622 -23.93914 -22.82489 -21.18619 -19.32547 -18.32249 -17.37446 -16.92320 -16.36873 -15.97654 -15.51943 -15.27429 -14.70836 -14.42319 -13.72532 -13.40882 -13.19373 -12.77684 -12.69473 -12.48093 -12.23350 -12.17823 -11.89676 -11.70194 -11.32449 -10.71075 -10.64602 -10.55915 -10.26444 -8.91140 -7.80478 -5.20364 1.46844 1.51398 1.59148 2.35624 2.54903 2.62661 3.10154 3.35382 3.66279 3.96799 4.02972 4.10685 4.19818 4.32264 4.49062 4.77060 4.83333 4.89494 4.93172 4.95875 5.05209 5.09486 5.26104 5.35199 5.49525 5.68037 5.71949 6.02554 6.32486 7.13659 7.38134 7.87255 8.29476 9.21447 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.011643 C = 0.009999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.714059 B = 2404.370207 C = 2799.689381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.120 4.120 3 C 0.267 3.733 4 N -0.599 5.599 5 C -0.256 4.256 6 H 0.076 0.924 7 C -0.046 4.046 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.304 1.304 13 C 0.156 3.844 14 C -0.134 4.134 15 H 0.053 0.947 16 C -0.141 4.141 17 C 0.040 3.960 18 O -0.415 6.415 19 C 0.075 3.925 20 H 0.214 0.786 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.244 0.756 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -8.374 -6.395 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.123 4.123 3 C 0.141 3.859 4 N -0.319 5.319 5 C -0.386 4.386 6 H 0.094 0.906 7 C -0.242 4.242 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.232 1.232 13 C 0.031 3.969 14 C -0.156 4.156 15 H 0.072 0.928 16 C -0.180 4.180 17 C -0.036 4.036 18 O -0.335 6.335 19 C -0.001 4.001 20 H 0.231 0.769 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.731 -8.305 -6.181 10.496 hybrid contribution -0.199 0.823 1.158 1.434 sum 1.532 -7.482 -5.023 9.141 Atomic orbital electron populations 1.24896 0.96339 1.04258 1.06889 1.24682 0.96062 0.96806 0.94757 1.17800 0.82666 0.92246 0.93149 1.44378 1.74585 1.04185 1.08703 1.19432 1.24919 1.05744 0.88457 0.90630 1.25481 0.97319 1.00812 1.00635 1.70286 1.22871 1.20321 1.42441 0.85439 0.78518 0.78046 0.79797 1.19173 1.21977 1.23169 1.21070 0.93784 0.84607 0.97472 1.23285 1.01097 0.96672 0.94526 0.92847 1.22956 1.02742 0.93194 0.99069 1.23343 0.99899 0.94294 0.86045 1.88788 1.56753 1.38744 1.49248 1.23251 0.93089 0.86120 0.97621 0.76899 0.91281 0.91575 0.94623 0.92190 0.91353 0.88711 0.89706 0.91182 0.88974 0.92679 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.86 19.18 74.32 1.43 -12.44 16 2 C -0.12 -5.77 10.39 31.12 0.32 -5.45 16 3 C 0.27 12.30 5.45 84.57 0.46 12.77 16 4 N -0.60 -27.64 2.49 -712.55 -1.77 -29.42 16 5 C -0.26 -13.09 8.96 84.04 0.75 -12.34 16 6 H 0.08 3.79 7.90 -2.91 -0.02 3.77 16 7 C -0.05 -2.49 4.85 84.86 0.41 -2.08 16 8 N -0.91 -52.03 9.49 21.65 0.21 -51.82 16 9 Si 0.95 44.15 29.61 68.60 2.03 46.18 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 C 0.16 5.76 5.11 86.38 0.44 6.20 16 14 C -0.13 -4.89 3.26 -9.49 -0.03 -4.92 16 15 H 0.05 2.26 6.91 -2.39 -0.02 2.25 16 16 C -0.14 -3.73 6.60 31.59 0.21 -3.52 16 17 C 0.04 1.11 7.70 72.35 0.56 1.66 16 18 O -0.42 -15.78 11.52 -148.98 -1.72 -17.50 16 19 C 0.08 3.04 6.45 72.66 0.47 3.51 16 20 H 0.21 8.14 7.80 -4.43 -0.03 8.10 16 21 H 0.07 3.56 6.42 -2.39 -0.02 3.54 16 22 H 0.07 2.58 7.98 -2.39 -0.02 2.56 16 23 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 24 H 0.06 2.09 7.87 -2.38 -0.02 2.08 16 25 H 0.07 2.18 7.95 -2.39 -0.02 2.16 16 26 H 0.09 2.07 7.86 -2.38 -0.02 2.05 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 Total: -1.00 -61.65 261.88 4.86 -56.79 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.09 Total: 12.37 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 5.02 Total: -16.60 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.57 Total: -81.24 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.72 Total: -17.50 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.65 4.86 -56.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393719280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.886 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds