Wall clock time and date at job start Sun Mar 29 2020 21:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49887 * 145.02785 * 4 2 1 7 7 O 1.21297 * 119.99892 * 68.61117 * 6 4 2 8 8 N 1.34773 * 119.99830 * 248.60529 * 6 4 2 9 9 C 1.37103 * 119.99691 * 180.02562 * 8 6 4 10 10 H 1.08001 * 120.00370 * 0.02562 * 9 8 6 11 11 C 1.38953 * 119.99889 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99936 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00143 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46749 * 359.97438 * 13 11 9 15 15 H 1.48488 * 109.47291 * 120.00167 * 13 11 9 16 16 H 1.48504 * 109.47157 * 240.00232 * 13 11 9 17 17 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 18 18 H 1.09004 * 117.49360 * 215.00124 * 17 2 1 19 19 C 1.52992 * 117.50124 * 0.02562 * 17 2 1 20 20 C 1.52999 * 117.49768 * 248.74765 * 19 17 2 21 21 C 1.52998 * 117.50003 * 180.08799 * 19 17 2 22 22 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 23 23 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 24 24 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 25 25 H 0.96999 * 120.00090 * 0.02562 * 8 6 4 26 26 H 0.97000 * 120.00717 * 179.97438 * 12 11 9 27 27 H 1.09006 * 115.54911 * 34.41190 * 19 17 2 28 28 H 1.09002 * 117.49779 * 359.97438 * 20 19 17 29 29 H 1.09006 * 117.50332 * 145.01879 * 20 19 17 30 30 H 1.09000 * 117.49563 * 214.97641 * 21 19 17 31 31 H 1.08997 * 117.49740 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 1 1.6120 -1.8585 -1.2683 6 6 3.5299 -0.7809 -1.4602 7 8 4.5189 -0.5203 -0.8082 8 7 3.5872 -0.7664 -2.8066 9 6 4.7636 -0.4576 -3.4393 10 1 5.6445 -0.2263 -2.8589 11 6 4.8226 -0.4421 -4.8275 12 7 3.7507 -0.7231 -5.5339 13 14 6.4256 -0.0220 -5.6897 14 1 7.4752 0.2537 -4.6761 15 1 6.8452 -1.1654 -6.5391 16 1 6.2304 1.1803 -6.5392 17 6 2.2365 -1.1208 0.7654 18 1 3.1714 -0.8746 1.2689 19 6 1.3589 -2.1560 1.4717 20 6 1.3562 -2.1539 3.0016 21 6 2.0654 -3.2756 2.2387 22 1 -0.3632 0.0791 1.0246 23 1 -0.3633 0.8477 -0.5809 24 1 -0.3633 -0.9270 -0.4437 25 1 2.7961 -0.9745 -3.3280 26 1 3.7916 -0.7120 -6.5029 27 1 0.4249 -2.4033 0.9670 28 1 1.9800 -1.4152 3.5050 29 1 0.4205 -2.4002 3.5037 30 1 1.5959 -4.2593 2.2391 31 1 3.1553 -3.2743 2.2406 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528328924.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:58 Heat of formation + Delta-G solvation = -3.954781 kcal Electronic energy + Delta-G solvation = -13389.478807 eV Core-core repulsion = 11057.898684 eV Total energy + Delta-G solvation = -2331.580123 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.18744 -37.29608 -35.09225 -33.81485 -31.15513 -28.40028 -25.58007 -23.54410 -22.25600 -21.54845 -19.04278 -18.89350 -17.81991 -16.23927 -15.50072 -14.69147 -14.08530 -13.93248 -13.58460 -13.26058 -12.79670 -12.41489 -12.27563 -11.57424 -11.47571 -11.44660 -11.11321 -10.93515 -10.66488 -10.45810 -10.33273 -10.21979 -9.58580 -9.35702 -9.10791 -8.34942 -7.95257 -6.40681 -3.81009 3.15465 3.27471 3.34969 3.53927 3.93054 4.18000 4.52424 4.60281 5.01224 5.02431 5.18680 5.29703 5.42161 5.46042 5.53736 5.65718 5.68895 5.72567 5.99328 6.01637 6.07819 6.22021 6.25737 6.27883 6.45092 6.64056 6.71388 7.56218 8.08265 8.63158 9.18871 9.57837 10.09723 10.77102 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053150 B = 0.006758 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.688325 B = 4142.399601 C = 4369.851418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 H 0.105 0.895 4 C -0.157 4.157 5 H 0.109 0.891 6 C 0.468 3.532 7 O -0.598 6.598 8 N -0.556 5.556 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.900 5.900 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.094 4.094 18 H 0.113 0.887 19 C -0.117 4.117 20 C -0.179 4.179 21 C -0.179 4.179 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.394 0.606 26 H 0.271 0.729 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 -1.994 9.624 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 H 0.123 0.877 4 C -0.178 4.178 5 H 0.127 0.873 6 C 0.254 3.746 7 O -0.484 6.484 8 N -0.191 5.191 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.541 5.541 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.113 4.113 18 H 0.131 0.869 19 C -0.135 4.135 20 C -0.216 4.216 21 C -0.216 4.216 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.227 0.773 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.963 -1.828 9.820 12.176 hybrid contribution 0.287 0.003 -0.979 1.020 sum -6.676 -1.825 8.841 11.228 Atomic orbital electron populations 1.21340 0.92950 1.01765 1.01394 1.22339 0.94656 0.94581 1.03384 0.87700 1.22375 0.98913 1.02309 0.94244 0.87311 1.19040 0.88333 0.84330 0.82896 1.90497 1.37121 1.55415 1.65373 1.41826 1.12814 1.60065 1.04381 1.19791 0.90141 1.43540 0.89499 0.87884 1.25277 0.98822 0.97384 0.96451 1.69627 1.28451 1.48961 1.07092 0.85795 0.81409 0.77977 0.79144 1.19215 1.20709 1.20718 1.21766 0.99757 0.97613 0.92153 0.86901 1.21702 0.99974 0.98808 0.93010 1.22919 1.02384 1.02091 0.94171 1.22946 1.00217 0.93771 1.04676 0.92259 0.92351 0.92616 0.77295 0.91894 0.87878 0.88832 0.89134 0.89059 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.05 37.16 0.34 -1.15 16 2 C -0.13 -2.12 6.11 -90.61 -0.55 -2.68 16 3 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 4 C -0.16 -2.99 5.55 -91.77 -0.51 -3.50 16 5 H 0.11 1.89 8.05 -51.93 -0.42 1.47 16 6 C 0.47 11.64 7.57 -10.99 -0.08 11.56 16 7 O -0.60 -16.92 15.83 5.54 0.09 -16.84 16 8 N -0.56 -14.71 5.29 -10.96 -0.06 -14.76 16 9 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 10 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 13 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.09 -1.57 5.36 -90.62 -0.49 -2.05 16 18 H 0.11 2.11 7.67 -51.93 -0.40 1.72 16 19 C -0.12 -1.56 5.17 -90.63 -0.47 -2.03 16 20 C -0.18 -2.03 10.25 -26.69 -0.27 -2.31 16 21 C -0.18 -2.22 10.25 -26.70 -0.27 -2.49 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 25 H 0.39 9.99 7.90 -40.82 -0.32 9.67 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.10 1.27 7.19 -51.93 -0.37 0.90 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -30.89 270.22 -7.12 -38.00 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.37 Total: 10.31 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.55 Total: -12.88 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.67 Total: -38.97 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.09 Total: -16.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.89 -7.12 -38.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328924.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.047 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds