Wall clock time and date at job start Sun Mar 29 2020 21:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49887 * 145.02785 * 4 2 1 7 7 O 1.21297 * 119.99892 * 68.61117 * 6 4 2 8 8 N 1.34773 * 119.99830 * 248.60529 * 6 4 2 9 9 C 1.37103 * 119.99691 * 180.02562 * 8 6 4 10 10 H 1.08001 * 120.00370 * 0.02562 * 9 8 6 11 11 C 1.38953 * 119.99889 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99936 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00143 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46749 * 359.97438 * 13 11 9 15 15 H 1.48488 * 109.47291 * 120.00167 * 13 11 9 16 16 H 1.48504 * 109.47157 * 240.00232 * 13 11 9 17 17 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 18 18 H 1.09004 * 117.49360 * 215.00124 * 17 2 1 19 19 C 1.52992 * 117.50124 * 0.02562 * 17 2 1 20 20 C 1.52999 * 117.49768 * 248.74765 * 19 17 2 21 21 C 1.52998 * 117.50003 * 180.08799 * 19 17 2 22 22 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 23 23 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 24 24 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 25 25 H 0.96999 * 120.00090 * 0.02562 * 8 6 4 26 26 H 0.97000 * 120.00717 * 179.97438 * 12 11 9 27 27 H 1.09006 * 115.54911 * 34.41190 * 19 17 2 28 28 H 1.09002 * 117.49779 * 359.97438 * 20 19 17 29 29 H 1.09006 * 117.50332 * 145.01879 * 20 19 17 30 30 H 1.09000 * 117.49563 * 214.97641 * 21 19 17 31 31 H 1.08997 * 117.49740 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 1 1.6120 -1.8585 -1.2683 6 6 3.5299 -0.7809 -1.4602 7 8 4.5189 -0.5203 -0.8082 8 7 3.5872 -0.7664 -2.8066 9 6 4.7636 -0.4576 -3.4393 10 1 5.6445 -0.2263 -2.8589 11 6 4.8226 -0.4421 -4.8275 12 7 3.7507 -0.7231 -5.5339 13 14 6.4256 -0.0220 -5.6897 14 1 7.4752 0.2537 -4.6761 15 1 6.8452 -1.1654 -6.5391 16 1 6.2304 1.1803 -6.5392 17 6 2.2365 -1.1208 0.7654 18 1 3.1714 -0.8746 1.2689 19 6 1.3589 -2.1560 1.4717 20 6 1.3562 -2.1539 3.0016 21 6 2.0654 -3.2756 2.2387 22 1 -0.3632 0.0791 1.0246 23 1 -0.3633 0.8477 -0.5809 24 1 -0.3633 -0.9270 -0.4437 25 1 2.7961 -0.9745 -3.3280 26 1 3.7916 -0.7120 -6.5029 27 1 0.4249 -2.4033 0.9670 28 1 1.9800 -1.4152 3.5050 29 1 0.4205 -2.4002 3.5037 30 1 1.5959 -4.2593 2.2391 31 1 3.1553 -3.2743 2.2406 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528328924.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:58 Heat of formation + Delta-G solvation = -23.133883 kcal Electronic energy + Delta-G solvation = -13390.310475 eV Core-core repulsion = 11057.898684 eV Total energy + Delta-G solvation = -2332.411791 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.80442 -38.86928 -36.40433 -35.85156 -33.28378 -29.60243 -27.50894 -25.05837 -23.20191 -22.93705 -20.82809 -20.17381 -19.86040 -18.02964 -16.91384 -16.41556 -15.76313 -15.51354 -15.37582 -14.73788 -14.08083 -13.78174 -13.60637 -13.42947 -12.96654 -12.89547 -12.47064 -12.35883 -12.16558 -12.02974 -11.82973 -11.60621 -11.47777 -10.73928 -10.47497 -10.19796 -10.07336 -8.51444 -6.01204 1.32805 1.39183 1.54186 1.84648 2.26504 2.60848 3.04016 3.15048 3.35460 3.73413 3.85278 3.95981 4.16754 4.28704 4.35176 4.41159 4.47145 4.57079 4.84190 4.87766 5.02170 5.07347 5.16183 5.21386 5.32836 5.36116 5.38521 5.48771 5.95035 6.53369 7.06009 7.50188 8.05543 8.66311 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053150 B = 0.006758 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.688325 B = 4142.399601 C = 4369.851418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.177 4.177 5 H 0.130 0.870 6 C 0.462 3.538 7 O -0.642 6.642 8 N -0.564 5.564 9 C -0.340 4.340 10 H 0.077 0.923 11 C -0.011 4.011 12 N -0.918 5.918 13 Si 0.997 3.003 14 H -0.274 1.274 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.084 4.084 18 H 0.083 0.917 19 C -0.127 4.127 20 C -0.159 4.159 21 C -0.187 4.187 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.397 0.603 26 H 0.280 0.720 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -2.398 9.881 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.198 4.198 5 H 0.147 0.853 6 C 0.250 3.750 7 O -0.530 6.530 8 N -0.199 5.199 9 C -0.470 4.470 10 H 0.095 0.905 11 C -0.211 4.211 12 N -0.559 5.559 13 Si 0.820 3.180 14 H -0.199 1.199 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.103 4.103 18 H 0.101 0.899 19 C -0.145 4.145 20 C -0.196 4.196 21 C -0.224 4.224 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.659 -2.239 10.070 13.469 hybrid contribution 0.823 0.140 -1.022 1.319 sum -7.837 -2.099 9.049 12.153 Atomic orbital electron populations 1.21363 0.89359 1.02820 1.03196 1.22462 0.97130 0.92900 1.00884 0.89666 1.22286 0.96827 1.05096 0.95583 0.85252 1.20058 0.89958 0.82543 0.82435 1.90454 1.39431 1.57036 1.66128 1.41894 1.12384 1.60544 1.05088 1.19753 0.90489 1.46314 0.90416 0.90455 1.26111 1.02354 0.96331 0.96340 1.69682 1.29973 1.48423 1.07778 0.84824 0.76945 0.78461 0.77792 1.19873 1.19266 1.19263 1.21754 0.99419 0.98806 0.90279 0.89912 1.21695 1.00116 0.98381 0.94307 1.23016 1.03178 1.00830 0.92544 1.23021 0.99406 0.94971 1.04958 0.89936 0.91630 0.91327 0.76902 0.91075 0.85858 0.89284 0.86252 0.86993 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.05 71.98 0.65 -1.80 16 2 C -0.11 -3.64 6.11 -10.79 -0.07 -3.70 16 3 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 4 C -0.18 -6.75 5.55 -11.54 -0.06 -6.81 16 5 H 0.13 4.36 8.05 -2.39 -0.02 4.34 16 6 C 0.46 23.89 7.57 87.66 0.66 24.56 16 7 O -0.64 -38.27 15.83 -3.08 -0.05 -38.32 16 8 N -0.56 -30.89 5.29 -306.98 -1.62 -32.51 16 9 C -0.34 -20.19 9.68 84.04 0.81 -19.38 16 10 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 11 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 12 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 13 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 C -0.08 -2.76 5.36 -10.79 -0.06 -2.82 16 18 H 0.08 3.23 7.67 -2.38 -0.02 3.21 16 19 C -0.13 -3.08 5.17 -10.80 -0.06 -3.14 16 20 C -0.16 -3.14 10.25 30.62 0.31 -2.83 16 21 C -0.19 -4.27 10.25 30.62 0.31 -3.96 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.38 7.40 -2.39 -0.02 1.37 16 25 H 0.40 20.67 7.90 -92.71 -0.73 19.94 16 26 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.12 2.54 7.19 -2.38 -0.02 2.53 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.61 270.22 4.01 -64.60 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.39 Total: 30.87 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 2.98 Total: -20.03 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.34 Total: -82.91 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.05 Total: -38.32 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -68.61 4.01 -64.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328924.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.470 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds