Wall clock time and date at job start Sun Mar 29 2020 21:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 115.55859 * 2 1 4 4 C 1.53000 * 117.50176 * 214.31361 * 2 1 3 5 5 H 1.09002 * 117.51478 * 359.97438 * 4 2 1 6 6 C 1.50699 * 117.49979 * 145.01447 * 4 2 1 7 7 O 1.21289 * 120.00153 * 332.67349 * 6 4 2 8 8 N 1.34774 * 119.99651 * 152.67090 * 6 4 2 9 9 C 1.37096 * 119.99946 * 180.02562 * 8 6 4 10 10 H 1.08004 * 120.00066 * 0.02562 * 9 8 6 11 11 C 1.38952 * 120.00454 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99788 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00340 * 179.72345 * 11 9 8 14 14 H 1.48502 * 109.47181 * 89.99773 * 13 11 9 15 15 H 1.48497 * 109.47216 * 209.99865 * 13 11 9 16 16 H 1.48497 * 109.47004 * 329.99779 * 13 11 9 17 17 C 1.52997 * 117.50413 * 145.68865 * 2 1 3 18 18 H 1.09007 * 117.49652 * 0.02562 * 17 2 1 19 19 C 1.53000 * 117.52292 * 214.97483 * 17 2 1 20 20 C 1.53000 * 117.49945 * 185.16450 * 19 17 2 21 21 C 1.52993 * 117.50085 * 116.50100 * 19 17 2 22 22 H 1.09001 * 109.47154 * 154.30003 * 1 2 3 23 23 H 1.09002 * 109.46629 * 274.29443 * 1 2 3 24 24 H 1.08994 * 109.47402 * 34.29536 * 1 2 3 25 25 H 0.96998 * 120.00537 * 0.02562 * 8 6 4 26 26 H 0.96996 * 120.00390 * 180.02562 * 12 11 9 27 27 H 1.08997 * 115.54591 * 330.82558 * 19 17 2 28 28 H 1.09005 * 117.49818 * 359.97438 * 20 19 17 29 29 H 1.08999 * 117.50089 * 145.02204 * 20 19 17 30 30 H 1.09008 * 117.49861 * 214.98046 * 21 19 17 31 31 H 1.08995 * 117.50094 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 1.6115 -1.8588 -1.2681 6 6 3.5292 -0.7810 -1.4609 7 8 3.7352 0.3535 -1.8375 8 7 4.4565 -1.7375 -1.6647 9 6 5.6328 -1.4281 -2.2973 10 1 5.8166 -0.4178 -2.6320 11 6 6.5887 -2.4144 -2.5080 12 7 6.3655 -3.6436 -2.1004 13 14 8.1882 -1.9946 -3.3768 14 1 9.2008 -1.5758 -2.3746 15 1 8.6814 -3.1881 -4.1099 16 1 7.9539 -0.8860 -4.3367 17 6 2.2365 -1.1209 0.7650 18 1 1.6113 -1.8587 1.2679 19 6 3.5492 -0.7764 1.4715 20 6 4.3170 -1.9222 2.1336 21 6 3.5825 -0.8932 2.9966 22 1 -0.3633 -0.9260 -0.4457 23 1 -0.3633 0.0770 1.0248 24 1 -0.3634 0.8489 -0.5790 25 1 4.2918 -2.6448 -1.3639 26 1 7.0328 -4.3320 -2.2470 27 1 4.1329 0.0230 1.0150 28 1 3.8868 -2.9215 2.0662 29 1 5.4059 -1.8764 2.1132 30 1 4.1884 -0.1708 3.5436 31 1 2.6691 -1.2151 3.4967 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528328927.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:00 Heat of formation + Delta-G solvation = -2.872717 kcal Electronic energy + Delta-G solvation = -13722.396256 eV Core-core repulsion = 11390.863055 eV Total energy + Delta-G solvation = -2331.533201 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16526 -36.96530 -35.13605 -33.78099 -31.12213 -28.47717 -25.38930 -23.43448 -21.98634 -21.15316 -19.89830 -18.50322 -17.68669 -15.97665 -15.27258 -14.75102 -14.00630 -13.98175 -13.50767 -13.07627 -12.86963 -12.58212 -12.03568 -11.55564 -11.27074 -11.22532 -11.06212 -10.88806 -10.66505 -10.38352 -10.27268 -10.13557 -9.49293 -9.35345 -8.98339 -8.30058 -7.91511 -6.38000 -3.78057 3.18793 3.27694 3.33712 3.71830 4.05850 4.19022 4.49303 4.71542 5.04197 5.19282 5.32637 5.35079 5.53843 5.60994 5.61756 5.69630 5.76250 5.92539 5.99944 6.07369 6.24322 6.27797 6.38496 6.47413 6.57249 6.68686 6.77866 7.58078 8.10804 8.66700 9.21684 9.61818 10.13876 10.79534 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034496 B = 0.009316 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.489706 B = 3004.796256 C = 3459.478296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.159 4.159 5 H 0.112 0.888 6 C 0.472 3.528 7 O -0.598 6.598 8 N -0.553 5.553 9 C -0.299 4.299 10 H 0.101 0.899 11 C 0.023 3.977 12 N -0.899 5.899 13 Si 0.928 3.072 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.104 4.104 18 H 0.102 0.898 19 C -0.116 4.116 20 C -0.167 4.167 21 C -0.184 4.184 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.394 0.606 26 H 0.271 0.729 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 1.030 7.320 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 H 0.128 0.872 4 C -0.180 4.180 5 H 0.130 0.870 6 C 0.258 3.742 7 O -0.484 6.484 8 N -0.187 5.187 9 C -0.429 4.429 10 H 0.119 0.881 11 C -0.178 4.178 12 N -0.540 5.540 13 Si 0.755 3.245 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.195 1.195 17 C -0.123 4.123 18 H 0.120 0.880 19 C -0.134 4.134 20 C -0.204 4.204 21 C -0.221 4.221 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.227 0.773 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.873 1.599 7.030 9.961 hybrid contribution 0.788 -0.549 -0.323 1.013 sum -6.085 1.050 6.706 9.116 Atomic orbital electron populations 1.21340 0.93069 1.01830 1.01286 1.22300 0.94285 0.95226 1.02454 0.87170 1.22432 0.99156 1.02609 0.93803 0.87042 1.18943 0.84741 0.85857 0.84677 1.90502 1.79987 1.21358 1.56548 1.41790 1.15181 1.10653 1.51073 1.19708 0.92737 0.97253 1.33167 0.88077 1.25241 0.99767 0.94848 0.97975 1.69622 1.36112 1.01283 1.46977 0.85897 0.81370 0.77920 0.79339 1.20456 1.20928 1.19460 1.21840 0.96922 1.01354 0.92199 0.87974 1.21666 0.96824 1.01601 0.93280 1.22857 0.99312 0.94676 1.03538 1.22926 1.02523 1.03279 0.93399 0.92736 0.92434 0.92214 0.77308 0.91938 0.87521 0.88926 0.88763 0.89287 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 10.19 37.16 0.38 -1.12 16 2 C -0.12 -2.05 5.64 -90.62 -0.51 -2.56 16 3 H 0.11 2.03 7.93 -51.93 -0.41 1.62 16 4 C -0.16 -3.01 5.82 -91.77 -0.53 -3.55 16 5 H 0.11 1.91 8.05 -51.93 -0.42 1.49 16 6 C 0.47 11.60 6.21 -10.99 -0.07 11.54 16 7 O -0.60 -16.87 16.18 5.55 0.09 -16.78 16 8 N -0.55 -14.36 5.29 -10.96 -0.06 -14.42 16 9 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 10 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 11 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 12 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 13 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.10 -1.70 5.57 -90.62 -0.50 -2.21 16 18 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 19 C -0.12 -1.99 5.08 -90.62 -0.46 -2.45 16 20 C -0.17 -2.69 10.26 -26.69 -0.27 -2.97 16 21 C -0.18 -2.58 10.25 -26.70 -0.27 -2.85 16 22 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.39 9.94 7.90 -40.82 -0.32 9.61 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.11 2.17 7.71 -51.93 -0.40 1.76 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -30.41 271.53 -7.10 -37.51 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.43 Total: 11.49 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.49 Total: -14.23 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.67 Total: -38.33 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.09 Total: -16.78 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.41 -7.10 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328927.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.632 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds