Wall clock time and date at job start Sun Mar 29 2020 21:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 115.55859 * 2 1 4 4 C 1.53000 * 117.50176 * 214.31361 * 2 1 3 5 5 H 1.09002 * 117.51478 * 359.97438 * 4 2 1 6 6 C 1.50699 * 117.49979 * 145.01447 * 4 2 1 7 7 O 1.21289 * 120.00153 * 332.67349 * 6 4 2 8 8 N 1.34774 * 119.99651 * 152.67090 * 6 4 2 9 9 C 1.37096 * 119.99946 * 180.02562 * 8 6 4 10 10 H 1.08004 * 120.00066 * 0.02562 * 9 8 6 11 11 C 1.38952 * 120.00454 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99788 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00340 * 179.72345 * 11 9 8 14 14 H 1.48502 * 109.47181 * 89.99773 * 13 11 9 15 15 H 1.48497 * 109.47216 * 209.99865 * 13 11 9 16 16 H 1.48497 * 109.47004 * 329.99779 * 13 11 9 17 17 C 1.52997 * 117.50413 * 145.68865 * 2 1 3 18 18 H 1.09007 * 117.49652 * 0.02562 * 17 2 1 19 19 C 1.53000 * 117.52292 * 214.97483 * 17 2 1 20 20 C 1.53000 * 117.49945 * 185.16450 * 19 17 2 21 21 C 1.52993 * 117.50085 * 116.50100 * 19 17 2 22 22 H 1.09001 * 109.47154 * 154.30003 * 1 2 3 23 23 H 1.09002 * 109.46629 * 274.29443 * 1 2 3 24 24 H 1.08994 * 109.47402 * 34.29536 * 1 2 3 25 25 H 0.96998 * 120.00537 * 0.02562 * 8 6 4 26 26 H 0.96996 * 120.00390 * 180.02562 * 12 11 9 27 27 H 1.08997 * 115.54591 * 330.82558 * 19 17 2 28 28 H 1.09005 * 117.49818 * 359.97438 * 20 19 17 29 29 H 1.08999 * 117.50089 * 145.02204 * 20 19 17 30 30 H 1.09008 * 117.49861 * 214.98046 * 21 19 17 31 31 H 1.08995 * 117.50094 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 1.6115 -1.8588 -1.2681 6 6 3.5292 -0.7810 -1.4609 7 8 3.7352 0.3535 -1.8375 8 7 4.4565 -1.7375 -1.6647 9 6 5.6328 -1.4281 -2.2973 10 1 5.8166 -0.4178 -2.6320 11 6 6.5887 -2.4144 -2.5080 12 7 6.3655 -3.6436 -2.1004 13 14 8.1882 -1.9946 -3.3768 14 1 9.2008 -1.5758 -2.3746 15 1 8.6814 -3.1881 -4.1099 16 1 7.9539 -0.8860 -4.3367 17 6 2.2365 -1.1209 0.7650 18 1 1.6113 -1.8587 1.2679 19 6 3.5492 -0.7764 1.4715 20 6 4.3170 -1.9222 2.1336 21 6 3.5825 -0.8932 2.9966 22 1 -0.3633 -0.9260 -0.4457 23 1 -0.3633 0.0770 1.0248 24 1 -0.3634 0.8489 -0.5790 25 1 4.2918 -2.6448 -1.3639 26 1 7.0328 -4.3320 -2.2470 27 1 4.1329 0.0230 1.0150 28 1 3.8868 -2.9215 2.0662 29 1 5.4059 -1.8764 2.1132 30 1 4.1884 -0.1708 3.5436 31 1 2.6691 -1.2151 3.4967 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528328927.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:00 Heat of formation + Delta-G solvation = -21.819315 kcal Electronic energy + Delta-G solvation = -13723.217842 eV Core-core repulsion = 11390.863055 eV Total energy + Delta-G solvation = -2332.354787 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81000 -38.63768 -36.53133 -35.83741 -33.22771 -29.66381 -27.33266 -25.02907 -23.17843 -22.69499 -21.23154 -20.38218 -19.65149 -17.70710 -16.77797 -16.59728 -15.88437 -15.58504 -15.11591 -14.54242 -14.28817 -13.87346 -13.55136 -13.43435 -12.97078 -12.58689 -12.44853 -12.38742 -12.21140 -12.14334 -11.95922 -11.54353 -11.46668 -10.68301 -10.49419 -10.13345 -10.02162 -8.47847 -5.96497 1.34708 1.38518 1.51461 1.98264 2.27369 2.57144 3.07807 3.18016 3.29967 3.64925 3.88562 3.99197 4.21197 4.31651 4.32606 4.38754 4.48945 4.63709 4.80027 4.92523 5.00937 5.03575 5.15651 5.24871 5.28450 5.32632 5.39116 5.51789 5.98797 6.58315 7.10513 7.56382 8.12165 8.69348 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034496 B = 0.009316 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.489706 B = 3004.796256 C = 3459.478296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 H 0.080 0.920 4 C -0.184 4.184 5 H 0.135 0.865 6 C 0.469 3.531 7 O -0.644 6.644 8 N -0.558 5.558 9 C -0.336 4.336 10 H 0.074 0.926 11 C -0.009 4.009 12 N -0.915 5.915 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.267 1.267 16 H -0.274 1.274 17 C -0.080 4.080 18 H 0.141 0.859 19 C -0.147 4.147 20 C -0.177 4.177 21 C -0.146 4.146 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.396 0.604 26 H 0.278 0.722 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 0.023 8.673 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 H 0.099 0.901 4 C -0.205 4.205 5 H 0.153 0.847 6 C 0.258 3.742 7 O -0.533 6.533 8 N -0.193 5.193 9 C -0.466 4.466 10 H 0.092 0.908 11 C -0.210 4.210 12 N -0.555 5.555 13 Si 0.814 3.186 14 H -0.196 1.196 15 H -0.192 1.192 16 H -0.199 1.199 17 C -0.098 4.098 18 H 0.159 0.841 19 C -0.165 4.165 20 C -0.214 4.214 21 C -0.182 4.182 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.230 0.770 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.050 0.569 8.397 11.646 hybrid contribution 1.172 -0.201 -0.723 1.392 sum -6.878 0.368 7.674 10.311 Atomic orbital electron populations 1.21355 0.89468 1.02757 1.03218 1.22392 0.96775 0.93369 1.00906 0.90140 1.22386 0.96888 1.05456 0.95785 0.84740 1.19923 0.86077 0.84785 0.83458 1.90455 1.81382 1.23234 1.58232 1.41821 1.15117 1.10997 1.51332 1.19647 0.94752 0.96709 1.35489 0.90759 1.26016 1.02431 0.94529 0.97987 1.69677 1.37211 1.01782 1.46874 0.84970 0.77338 0.77999 0.78281 1.19620 1.19202 1.19922 1.21983 0.96522 1.01525 0.89803 0.84126 1.21587 0.97475 1.01296 0.96146 1.22875 0.98447 0.95363 1.04704 1.23041 1.03036 1.01290 0.90857 0.91338 0.89821 0.91932 0.77026 0.91239 0.92078 0.87707 0.90708 0.88397 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.19 71.98 0.73 -1.72 16 2 C -0.12 -3.68 5.64 -10.80 -0.06 -3.74 16 3 H 0.08 3.04 7.93 -2.38 -0.02 3.02 16 4 C -0.18 -6.91 5.82 -11.54 -0.07 -6.97 16 5 H 0.13 4.39 8.05 -2.39 -0.02 4.37 16 6 C 0.47 24.00 6.21 87.66 0.54 24.54 16 7 O -0.64 -38.41 16.18 -3.06 -0.05 -38.46 16 8 N -0.56 -30.13 5.29 -306.99 -1.62 -31.75 16 9 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 10 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 11 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 12 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 13 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 C -0.08 -2.45 5.57 -10.80 -0.06 -2.51 16 18 H 0.14 3.28 8.14 -2.38 -0.02 3.26 16 19 C -0.15 -5.00 5.08 -10.80 -0.05 -5.05 16 20 C -0.18 -5.55 10.26 30.62 0.31 -5.23 16 21 C -0.15 -3.68 10.25 30.62 0.31 -3.37 16 22 H 0.07 1.35 7.90 -2.39 -0.02 1.33 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.40 20.53 7.90 -92.71 -0.73 19.80 16 26 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.06 2.63 7.71 -2.39 -0.02 2.61 16 28 H 0.10 3.01 8.14 -2.38 -0.02 2.99 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -68.68 271.53 3.97 -64.71 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.39 Total: 32.58 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 2.94 Total: -23.10 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.34 Total: -81.66 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.05 Total: -38.46 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.68 3.97 -64.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328927.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.890 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds