Wall clock time and date at job start Sun Mar 29 2020 22:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00429 * 2 1 4 4 H 1.48498 * 109.47343 * 240.00046 * 3 2 1 5 5 H 1.48497 * 109.46735 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47348 * 119.99679 * 3 2 1 7 7 C 1.37883 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99651 * 0.02562 * 7 2 1 10 10 N 1.46907 * 109.46930 * 180.02562 * 9 7 2 11 11 C 1.48528 * 111.00035 * 307.39616 * 10 9 7 12 12 C 1.55100 * 103.28553 * 200.33349 * 11 10 9 13 13 C 1.54594 * 102.84422 * 37.30452 * 12 11 10 14 14 H 1.08999 * 110.30967 * 97.11780 * 13 12 11 15 15 C 1.53003 * 110.30810 * 219.18902 * 13 12 11 16 16 C 1.53786 * 113.61503 * 198.07196 * 15 13 12 17 17 C 1.54049 * 86.98426 * 140.01654 * 16 15 13 18 18 C 1.53781 * 113.61337 * 295.67989 * 15 13 12 19 19 C 1.47899 * 110.99704 * 189.99834 * 10 9 7 20 20 H 0.96994 * 119.99657 * 0.02562 * 1 2 3 21 21 H 1.08989 * 109.47341 * 60.00172 * 9 7 2 22 22 H 1.08997 * 109.47278 * 299.99497 * 9 7 2 23 23 H 1.09004 * 110.66570 * 318.71407 * 11 10 9 24 24 H 1.09003 * 110.66686 * 81.67441 * 11 10 9 25 25 H 1.09004 * 110.70521 * 278.99712 * 12 11 10 26 26 H 1.09003 * 110.81066 * 155.66268 * 12 11 10 27 27 H 1.09002 * 112.85017 * 66.87578 * 15 13 12 28 28 H 1.08992 * 113.61675 * 254.61398 * 16 15 13 29 29 H 1.09000 * 113.60973 * 25.51686 * 16 15 13 30 30 H 1.09005 * 113.62125 * 220.02158 * 17 16 15 31 31 H 1.09003 * 113.61268 * 89.11946 * 17 16 15 32 32 H 1.08999 * 113.61567 * 334.48261 * 18 15 13 33 33 H 1.09000 * 113.61379 * 105.30384 * 18 15 13 34 34 H 1.08992 * 109.91988 * 26.48874 * 19 10 9 35 35 H 1.09004 * 110.07761 * 265.28550 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6158 -0.0015 11 6 3.1924 -3.4727 -1.1022 12 6 3.7370 -4.9137 -1.2824 13 6 2.4817 -5.7865 -1.0534 14 1 2.0322 -6.0605 -2.0078 15 6 2.8459 -7.0424 -0.2588 16 6 1.7947 -8.1605 -0.3580 17 6 2.9730 -9.1492 -0.4435 18 6 3.8073 -7.9845 -1.0024 19 6 1.5166 -4.9021 -0.2423 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8880 23 1 2.7040 -3.1305 -2.0147 24 1 3.9918 -2.7892 -0.8158 25 1 4.5007 -5.1332 -0.5363 26 1 4.1278 -5.0569 -2.2898 27 1 3.1539 -6.8221 0.7633 28 1 1.1919 -8.2743 0.5429 29 1 1.1950 -8.1165 -1.2671 30 1 2.8151 -9.9561 -1.1591 31 1 3.3158 -9.5049 0.5282 32 1 3.7567 -7.8925 -2.0874 33 1 4.8284 -7.9552 -0.6223 34 1 0.6019 -4.7328 -0.8103 35 1 1.2804 -5.3836 0.7067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591061845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:48 Heat of formation + Delta-G solvation = -8.892235 kcal Electronic energy + Delta-G solvation = -13928.875532 eV Core-core repulsion = 11732.914400 eV Total energy + Delta-G solvation = -2195.961132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.59125 -38.49968 -35.11495 -32.70505 -30.03696 -28.58884 -26.39222 -25.38606 -24.22342 -21.70302 -21.17428 -20.25291 -18.45314 -17.05533 -16.60279 -16.33281 -15.81993 -15.14805 -14.99697 -14.28948 -13.80667 -13.57192 -13.46651 -13.20964 -12.93522 -12.82120 -12.67082 -12.53777 -12.18818 -11.96353 -11.83218 -11.51881 -11.27627 -11.22710 -10.87091 -10.72841 -10.65074 -9.11811 -8.24677 -6.35795 1.38873 1.42961 1.50909 2.38220 3.08421 3.43221 3.59866 3.78165 3.82386 4.02326 4.03884 4.31546 4.37227 4.48120 4.61207 4.73520 4.81968 4.94407 4.96109 5.00602 5.02765 5.05643 5.09870 5.15761 5.18914 5.28228 5.29029 5.41079 5.53241 5.60714 5.72810 5.94948 6.25918 6.54658 6.80854 7.34684 8.87570 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.075601 B = 0.006283 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.278750 B = 4455.244156 C = 4705.446954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.066 0.934 9 C 0.199 3.801 10 N -0.530 5.530 11 C 0.048 3.952 12 C -0.105 4.105 13 C -0.077 4.077 14 H 0.076 0.924 15 C -0.100 4.100 16 C -0.141 4.141 17 C -0.134 4.134 18 C -0.129 4.129 19 C 0.038 3.962 20 H 0.266 0.734 21 H -0.039 1.039 22 H -0.001 1.001 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.016 0.984 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -15.207 -3.101 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.254 5.254 11 C -0.080 4.080 12 C -0.143 4.143 13 C -0.096 4.096 14 H 0.094 0.906 15 C -0.119 4.119 16 C -0.179 4.179 17 C -0.172 4.172 18 C -0.167 4.167 19 C -0.091 4.091 20 H 0.074 0.926 21 H -0.021 1.021 22 H 0.017 0.983 23 H 0.037 0.963 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.386 -15.087 -2.583 16.996 hybrid contribution -0.779 1.281 -0.598 1.614 sum 6.607 -13.806 -3.181 15.633 Atomic orbital electron populations 1.70092 1.07900 1.28108 1.51430 1.25992 0.95788 1.03464 0.94473 0.85380 0.78151 0.77529 0.79240 1.19009 1.20633 1.19189 1.21506 0.93703 0.91129 1.50750 0.91624 1.19529 0.90647 0.89509 0.93086 1.64716 1.15287 1.02022 1.43356 1.23022 0.95279 0.97863 0.91791 1.22535 0.97249 0.92118 1.02356 1.21966 0.94938 0.94711 0.97962 0.90586 1.22561 0.98068 0.92141 0.99089 1.23041 0.96653 0.96181 1.01989 1.22825 0.96177 0.96483 1.01693 1.22892 0.98162 0.95316 1.00295 1.22946 0.95779 0.91040 0.99297 0.92575 1.02125 0.98310 0.96269 0.91568 0.90368 0.89506 0.89978 0.91909 0.90202 0.90613 0.89818 0.89775 0.91084 0.96523 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.53 -31.41 8.56 25.60 0.22 -31.19 16 8 H 0.07 3.74 6.52 -2.91 -0.02 3.72 16 9 C 0.20 11.35 4.79 85.56 0.41 11.76 16 10 N -0.53 -24.66 5.39 -887.23 -4.78 -29.45 16 11 C 0.05 1.97 5.55 86.71 0.48 2.46 16 12 C -0.10 -3.10 6.28 31.86 0.20 -2.90 16 13 C -0.08 -2.22 2.72 -9.91 -0.03 -2.25 16 14 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 15 C -0.10 -2.34 2.73 -10.26 -0.03 -2.37 16 16 C -0.14 -2.88 7.66 31.21 0.24 -2.65 16 17 C -0.13 -2.24 8.09 31.21 0.25 -1.99 16 18 C -0.13 -2.37 7.29 31.12 0.23 -2.14 16 19 C 0.04 1.45 6.36 86.45 0.55 2.00 16 20 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 21 H -0.04 -2.39 7.81 -2.39 -0.02 -2.41 16 22 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.02 0.83 8.02 -2.38 -0.02 0.82 16 24 H 0.07 2.78 7.14 -2.39 -0.02 2.76 16 25 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.61 8.02 -2.39 -0.02 1.59 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 35 H 0.07 2.61 7.68 -2.38 -0.02 2.59 16 Total: -1.00 -65.57 277.07 1.54 -64.03 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.03 Total: 4.78 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 2.99 Total: -28.75 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -4.50 Total: -87.17 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.57 1.54 -64.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591061845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.140 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds