Wall clock time and date at job start Sun Mar 29 2020 22:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.48526 * 111.00221 * 52.60336 * 10 9 7 12 12 C 1.54942 * 103.22974 * 159.72041 * 11 10 9 13 13 C 1.54594 * 102.91819 * 322.58486 * 12 11 10 14 14 H 1.08994 * 110.39481 * 262.99727 * 13 12 11 15 15 C 1.53001 * 110.30920 * 140.87332 * 13 12 11 16 16 C 1.53777 * 113.61827 * 163.42266 * 15 13 12 17 17 C 1.53958 * 87.02027 * 220.05077 * 16 15 13 18 18 C 1.53781 * 113.61387 * 65.80875 * 15 13 12 19 19 C 1.47900 * 110.99772 * 169.99937 * 10 9 7 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.08998 * 110.67165 * 278.15466 * 11 10 9 24 24 H 1.09001 * 110.66970 * 41.28644 * 11 10 9 25 25 H 1.08994 * 110.72597 * 204.23057 * 12 11 10 26 26 H 1.09002 * 110.72261 * 80.94484 * 12 11 10 27 27 H 1.09004 * 112.84702 * 294.61798 * 15 13 12 28 28 H 1.09005 * 113.61247 * 334.56522 * 16 15 13 29 29 H 1.08998 * 113.61760 * 105.46774 * 16 15 13 30 30 H 1.09002 * 113.53343 * 270.80930 * 17 16 15 31 31 H 1.08996 * 113.66937 * 139.93380 * 17 16 15 32 32 H 1.08995 * 113.61687 * 254.52892 * 18 15 13 33 33 H 1.08996 * 113.61046 * 25.35881 * 18 15 13 34 34 H 1.08997 * 109.91841 * 333.50797 * 19 10 9 35 35 H 1.09003 * 109.91900 * 94.60652 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 3.1909 -3.4725 1.1040 12 6 3.7347 -4.9123 1.2828 13 6 2.4803 -5.7864 1.0541 14 1 2.0294 -6.0604 2.0078 15 6 2.8457 -7.0423 0.2603 16 6 1.7789 -8.1476 0.3303 17 6 2.9413 -9.1514 0.4369 18 6 3.7792 -8.0006 1.0186 19 6 1.5164 -4.9020 0.2416 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 3.9922 -2.7914 0.8178 24 1 2.7011 -3.1304 2.0158 25 1 4.1256 -5.0546 2.2902 26 1 4.4988 -5.1313 0.5368 27 1 3.1783 -6.8201 -0.7538 28 1 1.1594 -8.1003 1.2260 29 1 1.1951 -8.2496 -0.5845 30 1 3.2992 -9.5071 -0.5293 31 1 2.7580 -9.9595 1.1451 32 1 4.8078 -7.9842 0.6586 33 1 3.7085 -7.9120 2.1027 34 1 0.6009 -4.7327 0.8083 35 1 1.2813 -5.3803 -0.7093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591061846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:50 Heat of formation + Delta-G solvation = 5.862768 kcal Electronic energy + Delta-G solvation = -13961.428349 eV Core-core repulsion = 11766.107042 eV Total energy + Delta-G solvation = -2195.321307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46924 -37.22437 -33.34238 -30.91532 -28.65797 -26.28078 -25.49858 -23.94772 -22.55498 -20.20614 -19.95147 -19.32909 -16.76255 -15.55983 -15.42563 -14.83920 -13.89515 -13.69002 -13.41266 -12.80786 -12.55122 -12.44019 -12.13197 -11.86755 -11.53282 -11.20640 -10.87845 -10.83869 -10.69671 -10.51693 -10.27852 -10.12872 -10.05881 -9.95530 -9.70312 -8.54208 -8.38786 -7.36296 -6.36171 -4.04915 3.44294 3.48912 3.64676 4.53424 4.60248 4.68288 4.73535 4.86469 4.99667 5.31574 5.39635 5.45815 5.46592 5.61145 5.74528 5.77563 5.86545 5.91269 5.94630 5.98564 6.09564 6.20350 6.36120 6.39199 6.53577 6.57562 6.67623 6.76640 7.00015 7.18998 7.70560 8.02104 8.33518 8.58753 8.88197 9.66640 11.03454 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.075188 B = 0.006317 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.309993 B = 4431.403853 C = 4683.726379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.075 2.925 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.593 4.593 8 H 0.057 0.943 9 C 0.173 3.827 10 N -0.512 5.512 11 C 0.055 3.945 12 C -0.120 4.120 13 C -0.086 4.086 14 H 0.066 0.934 15 C -0.095 4.095 16 C -0.139 4.139 17 C -0.143 4.143 18 C -0.136 4.136 19 C 0.039 3.961 20 H 0.267 0.733 21 H -0.019 1.019 22 H 0.021 0.979 23 H 0.077 0.923 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -14.621 2.590 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.903 3.097 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.631 4.631 8 H 0.076 0.924 9 C 0.047 3.953 10 N -0.236 5.236 11 C -0.073 4.073 12 C -0.158 4.158 13 C -0.105 4.105 14 H 0.084 0.916 15 C -0.114 4.114 16 C -0.176 4.176 17 C -0.181 4.181 18 C -0.173 4.173 19 C -0.089 4.089 20 H 0.077 0.923 21 H -0.002 1.002 22 H 0.039 0.961 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.058 -12.955 2.065 14.450 hybrid contribution -0.394 -1.643 0.784 1.863 sum 5.664 -14.598 2.850 15.916 Atomic orbital electron populations 1.70762 1.06910 1.30437 1.46994 1.25863 0.96502 1.02755 0.93839 0.83462 0.74690 0.74882 0.76668 1.21536 1.21369 1.20987 1.22059 0.94788 0.91132 1.55156 0.92436 1.19999 0.91214 0.89358 0.94770 1.64745 1.15326 1.01585 1.41977 1.22944 0.96236 0.94844 0.93300 1.22568 0.97065 0.95631 1.00505 1.21992 0.96285 0.94464 0.97802 0.91572 1.22572 0.96369 0.92840 0.99601 1.22991 0.96422 0.96277 1.01928 1.22838 0.97643 0.96633 1.00955 1.22906 0.98296 0.96104 1.00036 1.22882 0.95490 0.92028 0.98543 0.92283 1.00156 0.96107 0.90492 0.94500 0.92159 0.91287 0.89054 0.90376 0.91711 0.90482 0.91915 0.91798 0.90402 0.95034 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.65 55.43 0.76 -27.70 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.59 -17.26 8.56 -34.44 -0.29 -17.56 16 8 H 0.06 1.66 6.52 -52.48 -0.34 1.32 16 9 C 0.17 4.68 4.10 -4.98 -0.02 4.66 16 10 N -0.51 -11.71 5.39 -231.89 -1.25 -12.96 16 11 C 0.05 1.13 5.55 -1.90 -0.01 1.12 16 12 C -0.12 -1.90 6.30 -24.87 -0.16 -2.06 16 13 C -0.09 -1.32 2.70 -89.26 -0.24 -1.56 16 14 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 15 C -0.10 -1.22 2.73 -89.81 -0.24 -1.46 16 16 C -0.14 -1.56 7.64 -25.83 -0.20 -1.76 16 17 C -0.14 -1.41 8.09 -25.82 -0.21 -1.62 16 18 C -0.14 -1.47 7.33 -25.92 -0.19 -1.66 16 19 C 0.04 0.74 6.35 -2.75 -0.02 0.72 16 20 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 21 H -0.02 -0.54 7.68 -51.93 -0.40 -0.94 16 22 H 0.02 0.60 8.01 -51.93 -0.42 0.18 16 23 H 0.08 1.64 7.15 -51.93 -0.37 1.27 16 24 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 35 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -30.79 275.84 -9.13 -39.92 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.03 Total: -3.24 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.68 Total: -20.85 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.49 Total: -40.66 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.79 -9.13 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591061846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.780 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds