Wall clock time and date at job start Sun Mar 29 2020 22:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.48526 * 111.00221 * 52.60336 * 10 9 7 12 12 C 1.54942 * 103.22974 * 159.72041 * 11 10 9 13 13 C 1.54594 * 102.91819 * 322.58486 * 12 11 10 14 14 H 1.08994 * 110.39481 * 262.99727 * 13 12 11 15 15 C 1.53001 * 110.30920 * 140.87332 * 13 12 11 16 16 C 1.53777 * 113.61827 * 163.42266 * 15 13 12 17 17 C 1.53958 * 87.02027 * 220.05077 * 16 15 13 18 18 C 1.53781 * 113.61387 * 65.80875 * 15 13 12 19 19 C 1.47900 * 110.99772 * 169.99937 * 10 9 7 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.08998 * 110.67165 * 278.15466 * 11 10 9 24 24 H 1.09001 * 110.66970 * 41.28644 * 11 10 9 25 25 H 1.08994 * 110.72597 * 204.23057 * 12 11 10 26 26 H 1.09002 * 110.72261 * 80.94484 * 12 11 10 27 27 H 1.09004 * 112.84702 * 294.61798 * 15 13 12 28 28 H 1.09005 * 113.61247 * 334.56522 * 16 15 13 29 29 H 1.08998 * 113.61760 * 105.46774 * 16 15 13 30 30 H 1.09002 * 113.53343 * 270.80930 * 17 16 15 31 31 H 1.08996 * 113.66937 * 139.93380 * 17 16 15 32 32 H 1.08995 * 113.61687 * 254.52892 * 18 15 13 33 33 H 1.08996 * 113.61046 * 25.35881 * 18 15 13 34 34 H 1.08997 * 109.91841 * 333.50797 * 19 10 9 35 35 H 1.09003 * 109.91900 * 94.60652 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 3.1909 -3.4725 1.1040 12 6 3.7347 -4.9123 1.2828 13 6 2.4803 -5.7864 1.0541 14 1 2.0294 -6.0604 2.0078 15 6 2.8457 -7.0423 0.2603 16 6 1.7789 -8.1476 0.3303 17 6 2.9413 -9.1514 0.4369 18 6 3.7792 -8.0006 1.0186 19 6 1.5164 -4.9020 0.2416 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 3.9922 -2.7914 0.8178 24 1 2.7011 -3.1304 2.0158 25 1 4.1256 -5.0546 2.2902 26 1 4.4988 -5.1313 0.5368 27 1 3.1783 -6.8201 -0.7538 28 1 1.1594 -8.1003 1.2260 29 1 1.1951 -8.2496 -0.5845 30 1 3.2992 -9.5071 -0.5293 31 1 2.7580 -9.9595 1.1451 32 1 4.8078 -7.9842 0.6586 33 1 3.7085 -7.9120 2.1027 34 1 0.6009 -4.7327 0.8083 35 1 1.2813 -5.3803 -0.7093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591061846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:50 Heat of formation + Delta-G solvation = -13.435850 kcal Electronic energy + Delta-G solvation = -13962.265200 eV Core-core repulsion = 11766.107042 eV Total energy + Delta-G solvation = -2196.158158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68126 -38.61953 -35.44817 -32.64541 -30.13781 -28.18315 -26.42816 -25.35122 -24.45805 -21.91677 -21.25418 -20.30383 -18.91204 -16.95342 -16.67504 -16.23898 -15.63666 -15.35070 -15.18665 -14.48000 -13.82419 -13.62531 -13.42221 -13.27213 -13.19401 -12.83204 -12.61535 -12.50657 -12.08168 -11.96104 -11.92360 -11.60153 -11.29928 -10.99979 -10.83889 -10.66826 -10.64279 -9.25772 -8.74695 -6.45070 1.50819 1.60731 1.79154 2.53266 3.09818 3.29514 3.52416 3.71350 3.76210 3.96330 3.98616 4.24144 4.30188 4.37959 4.53719 4.64347 4.65727 4.79382 4.86149 4.90563 4.92088 4.98354 5.00815 5.07568 5.12464 5.15891 5.21618 5.31856 5.48128 5.65092 5.70514 5.92331 6.24837 6.34812 6.56237 7.37082 8.64974 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.075188 B = 0.006317 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.309993 B = 4431.403853 C = 4683.726379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.126 2.874 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.606 4.606 8 H 0.058 0.942 9 C 0.185 3.815 10 N -0.525 5.525 11 C 0.050 3.950 12 C -0.105 4.105 13 C -0.076 4.076 14 H 0.077 0.923 15 C -0.100 4.100 16 C -0.141 4.141 17 C -0.134 4.134 18 C -0.129 4.129 19 C 0.036 3.964 20 H 0.252 0.748 21 H -0.044 1.044 22 H -0.005 1.005 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.017 0.983 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -15.758 3.159 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.235 4.235 3 Si 0.946 3.054 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.644 4.644 8 H 0.076 0.924 9 C 0.057 3.943 10 N -0.249 5.249 11 C -0.078 4.078 12 C -0.142 4.142 13 C -0.095 4.095 14 H 0.096 0.904 15 C -0.119 4.119 16 C -0.179 4.179 17 C -0.171 4.171 18 C -0.166 4.166 19 C -0.092 4.092 20 H 0.061 0.939 21 H -0.026 1.026 22 H 0.013 0.987 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.035 0.965 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.867 -14.135 2.639 16.390 hybrid contribution -0.991 -1.336 0.589 1.765 sum 6.876 -15.471 3.228 17.235 Atomic orbital electron populations 1.70900 1.07991 1.29575 1.48907 1.27531 0.96516 1.06911 0.92520 0.82833 0.74105 0.70574 0.77886 1.19585 1.19351 1.20640 1.22372 0.94966 0.92194 1.54826 0.92399 1.19701 0.91324 0.90888 0.92351 1.64651 1.15030 1.01719 1.43519 1.22986 0.95185 0.98050 0.91566 1.22515 0.97302 0.91908 1.02525 1.21962 0.94840 0.94707 0.97985 0.90447 1.22560 0.98190 0.92095 0.99049 1.23023 0.96660 0.96191 1.01991 1.22807 0.96206 0.96484 1.01644 1.22893 0.98331 0.95232 1.00186 1.22981 0.95812 0.90957 0.99424 0.93881 1.02614 0.98711 0.91660 0.96313 0.89333 0.90306 0.90009 0.90198 0.91918 0.89798 0.90537 0.91033 0.89725 0.96486 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.65 21.45 0.29 -59.36 16 2 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 3 Si 1.13 51.41 29.90 68.60 2.05 53.46 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.61 -36.03 8.56 25.60 0.22 -35.81 16 8 H 0.06 3.38 6.52 -2.91 -0.02 3.36 16 9 C 0.18 10.44 4.10 85.56 0.35 10.79 16 10 N -0.53 -24.51 5.39 -887.57 -4.78 -29.29 16 11 C 0.05 2.06 5.55 86.65 0.48 2.54 16 12 C -0.10 -3.10 6.30 31.80 0.20 -2.90 16 13 C -0.08 -2.18 2.70 -9.91 -0.03 -2.21 16 14 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 15 C -0.10 -2.33 2.73 -10.27 -0.03 -2.36 16 16 C -0.14 -2.85 7.64 31.18 0.24 -2.61 16 17 C -0.13 -2.20 8.09 31.18 0.25 -1.95 16 18 C -0.13 -2.33 7.33 31.12 0.23 -2.10 16 19 C 0.04 1.39 6.35 86.45 0.55 1.94 16 20 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 21 H -0.04 -2.63 7.68 -2.39 -0.02 -2.64 16 22 H -0.01 -0.31 8.01 -2.38 -0.02 -0.33 16 23 H 0.06 2.79 7.15 -2.39 -0.02 2.77 16 24 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.08 2.21 7.86 -2.39 -0.02 2.19 16 27 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.08 1.59 8.04 -2.38 -0.02 1.57 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 34 H 0.02 0.68 7.57 -2.39 -0.02 0.67 16 35 H 0.07 2.63 7.69 -2.39 -0.02 2.61 16 Total: -1.00 -67.47 275.84 1.62 -65.85 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.13 Total: 5.79 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 2.93 Total: -36.44 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.49 Total: -88.66 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -67.47 1.62 -65.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591061846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.414 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds