Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.46995 * 2 1 4 4 C 1.36939 * 120.00061 * 84.40697 * 3 2 1 5 5 H 1.07995 * 120.00146 * 321.57505 * 4 3 2 6 6 C 1.38815 * 120.00173 * 141.57398 * 4 3 2 7 7 N 1.31621 * 120.00068 * 162.41786 * 6 4 3 8 8 Si 1.86808 * 119.99864 * 342.42157 * 6 4 3 9 9 H 1.48495 * 109.47063 * 95.42602 * 8 6 4 10 10 H 1.48499 * 109.46758 * 215.43072 * 8 6 4 11 11 H 1.48498 * 109.46848 * 335.42721 * 8 6 4 12 12 C 1.46498 * 120.00184 * 264.12828 * 3 2 1 13 13 C 1.50702 * 109.46917 * 84.34442 * 12 3 2 14 14 C 1.41381 * 126.58046 * 258.59071 * 13 12 3 15 15 C 1.34514 * 106.84428 * 179.97438 * 14 13 12 16 16 O 1.34306 * 108.41651 * 0.02562 * 15 14 13 17 17 C 1.34305 * 109.47597 * 359.76886 * 16 15 14 18 18 C 1.50703 * 125.78633 * 180.24243 * 17 16 15 19 19 H 1.08997 * 109.47528 * 295.51533 * 1 2 3 20 20 H 1.08995 * 109.47469 * 55.51774 * 1 2 3 21 21 H 1.09007 * 109.46869 * 175.51602 * 1 2 3 22 22 H 1.08999 * 109.47140 * 239.99871 * 2 1 3 23 23 H 1.09000 * 109.47366 * 119.99912 * 2 1 3 24 24 H 0.97005 * 119.99586 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47663 * 204.34608 * 12 3 2 26 26 H 1.09002 * 109.47268 * 324.34926 * 12 3 2 27 27 H 1.08008 * 126.57961 * 0.02562 * 14 13 12 28 28 H 1.07998 * 125.78837 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46953 * 274.81934 * 18 17 16 30 30 H 1.08994 * 109.47426 * 34.81789 * 18 17 16 31 31 H 1.09002 * 109.46882 * 154.82122 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1375 2.0653 1.1803 5 1 1.3940 1.9415 1.9537 6 6 3.2141 2.9178 1.3827 7 7 3.1657 3.8242 2.3358 8 14 4.7317 2.7787 0.3022 9 1 4.6360 3.7540 -0.8135 10 1 5.9431 3.0685 1.1107 11 1 4.8221 1.4030 -0.2494 12 6 2.3848 2.0286 -1.2620 13 6 1.1507 2.6026 -1.9090 14 6 0.4219 2.0391 -2.9815 15 6 -0.5997 2.8750 -3.2404 16 8 -0.5284 3.9093 -2.3866 17 6 0.5285 3.7471 -1.5739 18 6 0.9476 4.6889 -0.4746 19 1 -0.3634 0.4426 0.9274 20 1 -0.3634 0.5818 -0.8470 21 1 -0.3633 -1.0246 -0.0803 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9183 4.4197 2.4775 25 1 3.0981 2.8290 -1.0661 26 1 2.8367 1.2945 -1.9292 27 1 0.6426 1.1144 -3.4941 28 1 -1.3499 2.7376 -4.0049 29 1 1.5709 5.4798 -0.8918 30 1 0.0622 5.1283 -0.0153 31 1 1.5130 4.1398 0.2784 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591257661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = 34.586491 kcal Electronic energy + Delta-G solvation = -14449.921838 eV Core-core repulsion = 12120.012991 eV Total energy + Delta-G solvation = -2329.908848 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.88665 -36.44308 -32.65823 -32.05935 -30.98161 -29.51840 -26.78443 -24.70953 -23.62774 -20.79934 -20.44405 -19.13986 -16.90459 -16.13966 -15.47570 -15.18858 -14.26667 -13.62769 -13.32552 -13.14153 -12.41880 -12.28741 -12.13648 -12.04843 -11.86950 -11.61225 -11.24465 -10.93130 -10.74558 -10.49505 -10.03729 -9.84611 -9.69324 -8.92055 -8.51120 -7.58959 -6.80471 -6.01765 -3.45301 2.40138 3.23683 3.32297 3.46208 3.49873 3.69932 4.48134 5.15974 5.30591 5.39239 5.58771 5.77859 5.99359 6.07953 6.19540 6.29579 6.34309 6.35665 6.49045 6.57409 6.63335 6.69716 6.81903 6.86264 7.14001 7.21247 7.32531 7.89755 8.05589 8.38731 8.98517 9.67775 10.13154 11.12450 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.014790 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.637458 B = 1892.772314 C = 2235.118496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 N -0.601 5.601 4 C -0.259 4.259 5 H 0.080 0.920 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.284 1.284 10 H -0.301 1.301 11 H -0.268 1.268 12 C 0.198 3.802 13 C -0.185 4.185 14 C -0.200 4.200 15 C -0.073 4.073 16 O -0.188 6.188 17 C 0.008 3.992 18 C -0.094 4.094 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.264 0.736 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.137 0.863 28 H 0.191 0.809 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -2.642 -8.791 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 N -0.324 5.324 4 C -0.388 4.388 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.544 5.544 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.230 1.230 11 H -0.193 1.193 12 C 0.072 3.928 13 C -0.189 4.189 14 C -0.220 4.220 15 C -0.140 4.140 16 O -0.085 6.085 17 C -0.042 4.042 18 C -0.149 4.149 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.154 0.846 28 H 0.207 0.793 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.059 -2.293 -8.648 9.825 hybrid contribution 0.727 -0.162 -0.778 1.077 sum -3.332 -2.456 -9.426 10.295 Atomic orbital electron populations 1.22291 0.99471 0.98927 1.01838 1.20798 0.92297 0.85811 0.98866 1.44160 1.77142 1.09253 1.01812 1.18784 1.05309 1.21446 0.93256 0.90281 1.25476 0.97135 0.97622 0.96383 1.69827 1.31597 1.19260 1.33667 0.86951 0.84028 0.78794 0.79639 1.21244 1.22951 1.19266 1.19619 0.90737 0.95419 0.86976 1.21235 1.03036 0.95948 0.98673 1.21648 0.97846 1.01623 1.00901 1.23655 1.02747 0.89281 0.98339 1.83954 1.43459 1.42416 1.38712 1.22479 0.87840 0.98908 0.94977 1.20807 1.01745 0.97558 0.94830 0.93188 0.93135 0.94629 0.94671 0.93169 0.92584 0.92000 0.93732 0.84553 0.79263 0.92067 0.91990 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.20 37.16 0.38 -2.73 16 2 C 0.15 3.01 6.43 -4.05 -0.03 2.98 16 3 N -0.60 -14.17 2.09 -174.62 -0.37 -14.53 16 4 C -0.26 -6.92 8.40 -15.06 -0.13 -7.05 16 5 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 6 C 0.03 0.92 3.90 -17.43 -0.07 0.85 16 7 N -0.90 -25.88 13.93 55.49 0.77 -25.10 16 8 Si 0.88 21.63 24.75 -169.99 -4.21 17.42 16 9 H -0.28 -6.87 6.73 56.52 0.38 -6.49 16 10 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 11 H -0.27 -6.53 7.06 56.52 0.40 -6.13 16 12 C 0.20 4.42 4.23 -5.19 -0.02 4.40 16 13 C -0.19 -3.88 5.17 -104.74 -0.54 -4.42 16 14 C -0.20 -3.54 10.11 -39.70 -0.40 -3.94 16 15 C -0.07 -1.19 12.09 29.42 0.36 -0.84 16 16 O -0.19 -3.65 10.65 5.70 0.06 -3.59 16 17 C 0.01 0.18 7.32 -35.63 -0.26 -0.08 16 18 C -0.09 -1.99 10.26 36.01 0.37 -1.62 16 19 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 20 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.03 0.65 7.89 -51.93 -0.41 0.24 16 23 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.06 1.49 3.30 -51.93 -0.17 1.31 16 26 H 0.04 0.92 7.95 -51.93 -0.41 0.51 16 27 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.14 3.47 4.17 -51.93 -0.22 3.26 16 LS Contribution 253.64 15.07 3.82 3.82 Total: -1.00 -28.78 253.64 -4.36 -33.14 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.10 Total: 1.28 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.34 Total: -12.44 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.41 Total: -39.64 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.06 Total: -3.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.21 Total: 17.42 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.78 -4.36 -33.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.725 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds