Wall clock time and date at job start Sun Mar 29 2020 21:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.46995 * 2 1 4 4 C 1.36939 * 120.00061 * 84.40697 * 3 2 1 5 5 H 1.07995 * 120.00146 * 321.57505 * 4 3 2 6 6 C 1.38815 * 120.00173 * 141.57398 * 4 3 2 7 7 N 1.31621 * 120.00068 * 162.41786 * 6 4 3 8 8 Si 1.86808 * 119.99864 * 342.42157 * 6 4 3 9 9 H 1.48495 * 109.47063 * 95.42602 * 8 6 4 10 10 H 1.48499 * 109.46758 * 215.43072 * 8 6 4 11 11 H 1.48498 * 109.46848 * 335.42721 * 8 6 4 12 12 C 1.46498 * 120.00184 * 264.12828 * 3 2 1 13 13 C 1.50702 * 109.46917 * 84.34442 * 12 3 2 14 14 C 1.41381 * 126.58046 * 258.59071 * 13 12 3 15 15 C 1.34514 * 106.84428 * 179.97438 * 14 13 12 16 16 O 1.34306 * 108.41651 * 0.02562 * 15 14 13 17 17 C 1.34305 * 109.47597 * 359.76886 * 16 15 14 18 18 C 1.50703 * 125.78633 * 180.24243 * 17 16 15 19 19 H 1.08997 * 109.47528 * 295.51533 * 1 2 3 20 20 H 1.08995 * 109.47469 * 55.51774 * 1 2 3 21 21 H 1.09007 * 109.46869 * 175.51602 * 1 2 3 22 22 H 1.08999 * 109.47140 * 239.99871 * 2 1 3 23 23 H 1.09000 * 109.47366 * 119.99912 * 2 1 3 24 24 H 0.97005 * 119.99586 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47663 * 204.34608 * 12 3 2 26 26 H 1.09002 * 109.47268 * 324.34926 * 12 3 2 27 27 H 1.08008 * 126.57961 * 0.02562 * 14 13 12 28 28 H 1.07998 * 125.78837 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46953 * 274.81934 * 18 17 16 30 30 H 1.08994 * 109.47426 * 34.81789 * 18 17 16 31 31 H 1.09002 * 109.46882 * 154.82122 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1375 2.0653 1.1803 5 1 1.3940 1.9415 1.9537 6 6 3.2141 2.9178 1.3827 7 7 3.1657 3.8242 2.3358 8 14 4.7317 2.7787 0.3022 9 1 4.6360 3.7540 -0.8135 10 1 5.9431 3.0685 1.1107 11 1 4.8221 1.4030 -0.2494 12 6 2.3848 2.0286 -1.2620 13 6 1.1507 2.6026 -1.9090 14 6 0.4219 2.0391 -2.9815 15 6 -0.5997 2.8750 -3.2404 16 8 -0.5284 3.9093 -2.3866 17 6 0.5285 3.7471 -1.5739 18 6 0.9476 4.6889 -0.4746 19 1 -0.3634 0.4426 0.9274 20 1 -0.3634 0.5818 -0.8470 21 1 -0.3633 -1.0246 -0.0803 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.9183 4.4197 2.4775 25 1 3.0981 2.8290 -1.0661 26 1 2.8367 1.2945 -1.9292 27 1 0.6426 1.1144 -3.4941 28 1 -1.3499 2.7376 -4.0049 29 1 1.5709 5.4798 -0.8918 30 1 0.0622 5.1283 -0.0153 31 1 1.5130 4.1398 0.2784 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591257661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:29 Heat of formation + Delta-G solvation = 16.995954 kcal Electronic energy + Delta-G solvation = -14450.684621 eV Core-core repulsion = 12120.012991 eV Total energy + Delta-G solvation = -2330.671631 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.34260 -38.22246 -34.28102 -33.96294 -32.51817 -31.20752 -28.51102 -26.38168 -25.40218 -22.23939 -22.16993 -20.73063 -18.71586 -17.72846 -17.19793 -16.85895 -16.01250 -15.15427 -15.10721 -14.89167 -14.12334 -14.06603 -13.71328 -13.67699 -13.46503 -13.23791 -12.93285 -12.65181 -12.46756 -12.32471 -11.80959 -11.64326 -11.54032 -10.58992 -10.35997 -9.09160 -8.70929 -8.12857 -5.53757 0.96403 1.32277 1.43397 1.52775 1.81300 2.29750 2.44044 3.16450 3.50753 4.03406 4.10689 4.25779 4.42881 4.57363 4.62210 4.68215 4.71548 4.79519 4.87341 5.05003 5.06962 5.20511 5.26340 5.33336 5.57915 5.60530 5.78836 6.01627 6.24300 6.42700 7.03638 7.67210 8.12600 9.05037 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.014790 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.637458 B = 1892.772314 C = 2235.118496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 N -0.611 5.611 4 C -0.244 4.244 5 H 0.039 0.961 6 C -0.005 4.005 7 N -0.942 5.942 8 Si 0.929 3.071 9 H -0.278 1.278 10 H -0.310 1.310 11 H -0.257 1.257 12 C 0.195 3.805 13 C -0.197 4.197 14 C -0.211 4.211 15 C -0.051 4.051 16 O -0.197 6.197 17 C -0.022 4.022 18 C -0.092 4.092 19 H 0.023 0.977 20 H 0.044 0.956 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.263 0.737 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.165 0.835 28 H 0.241 0.759 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -4.011 -11.432 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 N -0.334 5.334 4 C -0.374 4.374 5 H 0.057 0.943 6 C -0.202 4.202 7 N -0.586 5.586 8 Si 0.758 3.242 9 H -0.205 1.205 10 H -0.239 1.239 11 H -0.181 1.181 12 C 0.070 3.930 13 C -0.200 4.200 14 C -0.230 4.230 15 C -0.117 4.117 16 O -0.094 6.094 17 C -0.073 4.073 18 C -0.148 4.148 19 H 0.042 0.958 20 H 0.063 0.937 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.182 0.818 28 H 0.257 0.743 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.655 -3.689 -11.317 12.781 hybrid contribution 0.784 0.223 -0.001 0.815 sum -3.871 -3.466 -11.318 12.454 Atomic orbital electron populations 1.22135 0.98204 1.00711 1.00165 1.20984 0.93222 0.84203 0.99937 1.44266 1.77458 1.10475 1.01231 1.18505 1.03964 1.21233 0.93686 0.94285 1.25870 0.99274 0.97414 0.97659 1.69935 1.32220 1.20492 1.35916 0.86085 0.80537 0.79271 0.78274 1.20532 1.23891 1.18148 1.19617 0.91283 0.95342 0.86708 1.21244 1.02740 0.96227 0.99822 1.21909 0.97805 1.03023 1.00308 1.24663 1.02632 0.87189 0.97251 1.83953 1.42729 1.43698 1.39053 1.22371 0.89269 0.99570 0.96051 1.20612 1.01773 0.97679 0.94720 0.95766 0.93666 0.91190 0.91832 0.93754 0.92785 0.94039 0.91568 0.81792 0.74253 0.91155 0.91474 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.20 71.98 0.73 -4.69 16 2 C 0.14 5.46 6.43 86.38 0.56 6.02 16 3 N -0.61 -28.32 2.09 -706.37 -1.48 -29.80 16 4 C -0.24 -13.33 8.40 84.03 0.71 -12.62 16 5 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 6 C -0.01 -0.30 3.90 84.86 0.33 0.03 16 7 N -0.94 -55.90 13.93 21.65 0.30 -55.59 16 8 Si 0.93 44.93 24.75 68.60 1.70 46.63 16 9 H -0.28 -13.01 6.73 99.48 0.67 -12.34 16 10 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 11 H -0.26 -11.87 7.06 99.48 0.70 -11.17 16 12 C 0.20 8.40 4.23 85.63 0.36 8.76 16 13 C -0.20 -7.84 5.17 -19.94 -0.10 -7.95 16 14 C -0.21 -6.63 10.11 22.19 0.22 -6.40 16 15 C -0.05 -1.45 12.09 66.97 0.81 -0.64 16 16 O -0.20 -7.17 10.65 -2.53 -0.03 -7.19 16 17 C -0.02 -0.93 7.32 24.83 0.18 -0.74 16 18 C -0.09 -3.97 10.26 71.24 0.73 -3.24 16 19 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 20 H 0.04 1.64 6.75 -2.39 -0.02 1.62 16 21 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 22 H 0.06 2.11 7.89 -2.39 -0.02 2.09 16 23 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 24 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 25 H 0.04 1.95 3.30 -2.39 -0.01 1.94 16 26 H 0.07 2.52 7.95 -2.39 -0.02 2.50 16 27 H 0.16 4.16 8.06 -2.91 -0.02 4.13 16 28 H 0.24 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.11 5.52 4.17 -2.39 -0.01 5.51 16 Total: -1.00 -63.12 253.64 6.10 -57.02 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.07 Total: 10.41 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.53 Total: -21.48 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.18 Total: -85.39 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.03 Total: -7.19 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.70 Total: 46.63 kcal Total: -63.12 6.10 -57.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds