Wall clock time and date at job start Sun Mar 29 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46899 * 109.47107 * 79.70759 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99645 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47069 * 60.00160 * 15 13 11 17 17 H 1.48500 * 109.46785 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47146 * 299.99864 * 15 13 11 19 19 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 20 20 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 21 21 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 22 22 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 23 23 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 25 25 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 26 26 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 27 27 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 28 28 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 29 29 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 30 30 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 31 31 H 0.96998 * 120.00316 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4538 -2.9226 -1.3553 9 6 1.0029 -4.3203 -1.3907 10 6 0.6138 -4.6944 -2.8223 11 6 0.1507 -6.1280 -2.8585 12 1 0.1350 -6.7136 -1.9511 13 6 -0.2531 -6.6922 -4.0500 14 7 -0.2346 -5.9791 -5.1548 15 14 -0.8279 -8.4691 -4.0947 16 1 -2.0049 -8.6311 -3.2040 17 1 -1.2043 -8.8327 -5.4844 18 1 0.2694 -9.3560 -3.6314 19 1 -0.3634 0.0029 1.0277 20 1 -0.3633 0.8885 -0.5165 21 1 -0.3634 -0.8915 -0.5113 22 1 4.4336 1.3755 -0.0102 23 1 4.5212 -1.2434 -0.0068 24 1 0.9796 -2.6346 0.6710 25 1 2.6489 -3.1658 0.3553 26 1 0.7472 -2.3048 -1.7258 27 1 1.8092 -4.9708 -1.0519 28 1 0.1397 -4.4402 -0.7359 29 1 -0.1924 -4.0439 -3.1616 30 1 1.4772 -4.5745 -3.4767 31 1 -0.5190 -6.3759 -5.9930 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591260759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:37 Heat of formation + Delta-G solvation = -0.938923 kcal Electronic energy + Delta-G solvation = -13093.262422 eV Core-core repulsion = 10761.813076 eV Total energy + Delta-G solvation = -2331.449345 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.47378 -36.31530 -33.64006 -32.38659 -31.77923 -29.43612 -26.86858 -25.01082 -23.15054 -21.38158 -20.53711 -19.43858 -16.91622 -16.32055 -16.03708 -15.18750 -14.58676 -14.33754 -13.82564 -13.32808 -13.10030 -12.97537 -12.64581 -12.33949 -12.17381 -11.74293 -11.35967 -10.96301 -10.89707 -10.55555 -9.98811 -9.68789 -9.34006 -9.13850 -8.34133 -8.26442 -7.76159 -5.98117 -4.00974 1.81343 2.69479 3.09443 3.34505 3.38831 3.41201 4.45826 4.77975 4.91641 5.01512 5.16759 5.30263 5.37660 5.43922 5.60954 5.69754 5.87129 5.93631 6.16344 6.30225 6.35077 6.44156 6.64499 6.98960 7.23589 7.49985 7.74331 7.84168 7.97333 8.10550 8.44893 9.06149 9.62703 11.13313 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066653 B = 0.005176 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.985790 B = 5408.513167 C = 5476.430614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 O -0.180 6.180 4 C -0.055 4.055 5 C -0.191 4.191 6 C -0.165 4.165 7 C 0.126 3.874 8 N -0.686 5.686 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.200 0.800 23 H 0.147 0.853 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.334 0.666 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 11.882 10.908 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 O -0.077 6.077 4 C -0.122 4.122 5 C -0.211 4.211 6 C -0.166 4.166 7 C -0.003 4.003 8 N -0.318 5.318 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.096 0.904 20 H 0.095 0.905 21 H 0.106 0.894 22 H 0.216 0.784 23 H 0.164 0.836 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.152 0.848 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.322 11.990 10.529 16.532 hybrid contribution -0.883 -1.062 0.263 1.406 sum 3.440 10.927 10.791 15.738 Atomic orbital electron populations 1.20298 0.85339 1.04148 1.03217 1.22240 0.93839 0.83943 1.06599 1.83971 1.16854 1.34875 1.71959 1.23872 0.84236 0.95986 1.08138 1.21710 0.97833 0.94556 1.06993 1.20235 0.92959 0.95808 1.07641 1.20232 0.99118 0.89872 0.91095 1.60621 1.46781 1.05143 1.19221 1.22191 0.96962 0.86235 1.00907 1.19066 0.96774 0.95773 0.89603 1.21144 1.43768 0.97143 0.94087 0.92790 1.25000 0.95774 0.97864 0.95675 1.69960 1.47826 1.36489 0.98992 0.86645 0.79157 0.85144 0.76958 1.20288 1.21265 1.20220 0.90358 0.90509 0.89438 0.78369 0.83565 0.95092 0.90572 0.84788 0.92260 0.96623 0.96839 0.95628 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.21 36.00 0.37 -0.43 16 2 C -0.02 -0.21 7.32 -35.63 -0.26 -0.47 16 3 O -0.18 -2.45 10.65 5.71 0.06 -2.39 16 4 C -0.06 -0.65 12.09 29.41 0.36 -0.30 16 5 C -0.19 -2.57 10.87 -39.70 -0.43 -3.00 16 6 C -0.16 -2.44 5.68 -104.74 -0.59 -3.03 16 7 C 0.13 1.97 5.70 -4.98 -0.03 1.95 16 8 N -0.69 -12.86 6.49 -115.05 -0.75 -13.61 16 9 C 0.06 1.40 5.62 -3.82 -0.02 1.37 16 10 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 22 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 23 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.33 6.07 7.85 -39.29 -0.31 5.76 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -31.74 270.72 -6.50 -38.24 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.44 Total: 0.48 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.17 Total: -17.10 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.01 Total: -40.07 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.06 Total: -2.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.74 -6.50 -38.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591260759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.305 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds