Wall clock time and date at job start Sun Mar 29 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34300 * 125.79042 * 2 1 4 4 C 1.34305 * 109.47485 * 180.23263 * 3 2 1 5 5 C 1.34511 * 108.42313 * 359.77077 * 4 3 2 6 6 C 1.34514 * 125.78777 * 179.82999 * 2 1 3 7 7 C 1.50703 * 126.58118 * 0.04195 * 6 2 1 8 8 N 1.46899 * 109.47107 * 79.70759 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47092 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99873 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99645 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47069 * 60.00160 * 15 13 11 17 17 H 1.48500 * 109.46785 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47146 * 299.99864 * 15 13 11 19 19 H 1.09003 * 109.47513 * 270.16402 * 1 2 3 20 20 H 1.09004 * 109.47098 * 30.17221 * 1 2 3 21 21 H 1.09001 * 109.47245 * 150.16554 * 1 2 3 22 22 H 1.08003 * 125.78822 * 179.75276 * 4 3 2 23 23 H 1.08001 * 126.57953 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47152 * 319.70846 * 7 6 2 25 25 H 1.09001 * 109.46980 * 199.70947 * 7 6 2 26 26 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 27 27 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 28 28 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 29 29 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 30 30 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 31 31 H 0.96998 * 120.00316 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5813 0.7121 -0.0051 5 6 3.6308 -0.6321 -0.0034 6 6 2.2936 -1.0912 0.0032 7 6 1.8371 -2.5274 0.0066 8 7 1.4538 -2.9226 -1.3553 9 6 1.0029 -4.3203 -1.3907 10 6 0.6138 -4.6944 -2.8223 11 6 0.1507 -6.1280 -2.8585 12 1 0.1350 -6.7136 -1.9511 13 6 -0.2531 -6.6922 -4.0500 14 7 -0.2346 -5.9791 -5.1548 15 14 -0.8279 -8.4691 -4.0947 16 1 -2.0049 -8.6311 -3.2040 17 1 -1.2043 -8.8327 -5.4844 18 1 0.2694 -9.3560 -3.6314 19 1 -0.3634 0.0029 1.0277 20 1 -0.3633 0.8885 -0.5165 21 1 -0.3634 -0.8915 -0.5113 22 1 4.4336 1.3755 -0.0102 23 1 4.5212 -1.2434 -0.0068 24 1 0.9796 -2.6346 0.6710 25 1 2.6489 -3.1658 0.3553 26 1 0.7472 -2.3048 -1.7258 27 1 1.8092 -4.9708 -1.0519 28 1 0.1397 -4.4402 -0.7359 29 1 -0.1924 -4.0439 -3.1616 30 1 1.4772 -4.5745 -3.4767 31 1 -0.5190 -6.3759 -5.9930 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591260759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:37 Heat of formation + Delta-G solvation = -22.090737 kcal Electronic energy + Delta-G solvation = -13094.179633 eV Core-core repulsion = 10761.813076 eV Total energy + Delta-G solvation = -2332.366557 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.47779 -37.81337 -35.40272 -34.01704 -32.71971 -31.22384 -28.13310 -26.52368 -24.81471 -22.58166 -22.23460 -20.50587 -18.50423 -17.94179 -17.10522 -16.69040 -16.44921 -15.49721 -15.39096 -14.75858 -14.44538 -14.14175 -13.79946 -13.61165 -13.48510 -13.21259 -13.04498 -12.77084 -12.43189 -12.31282 -11.91413 -11.43729 -11.33239 -10.63817 -10.55375 -9.37783 -9.15790 -8.19587 -6.31643 0.82299 1.41355 1.44892 1.52799 1.64934 2.16911 2.41719 3.13818 3.52383 3.89102 3.97574 3.99234 4.38580 4.48545 4.55631 4.64240 4.65645 4.70005 4.86410 4.94434 5.05794 5.16202 5.37441 5.43986 5.62199 5.66452 5.78087 6.12429 6.23714 6.26459 6.50485 6.85452 7.37848 8.92527 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066653 B = 0.005176 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.985790 B = 5408.513167 C = 5476.430614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.022 4.022 3 O -0.188 6.188 4 C -0.044 4.044 5 C -0.217 4.217 6 C -0.191 4.191 7 C 0.132 3.868 8 N -0.694 5.694 9 C 0.083 3.917 10 C 0.031 3.969 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.267 1.267 19 H 0.097 0.903 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.240 0.760 23 H 0.155 0.845 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.337 0.663 27 H 0.059 0.941 28 H 0.024 0.976 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 11.845 12.011 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 O -0.085 6.085 4 C -0.110 4.110 5 C -0.236 4.236 6 C -0.193 4.193 7 C 0.003 3.997 8 N -0.326 5.326 9 C -0.045 4.045 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.192 1.192 19 H 0.115 0.885 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.256 0.744 23 H 0.173 0.827 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.274 11.964 11.655 17.241 hybrid contribution -0.819 -0.962 -0.081 1.265 sum 3.455 11.003 11.574 16.339 Atomic orbital electron populations 1.20400 0.83733 1.04415 1.04523 1.22673 0.94982 0.83759 1.05836 1.83992 1.17647 1.34922 1.71921 1.24636 0.84475 0.96149 1.05750 1.21967 0.97716 0.95662 1.08281 1.20292 0.94086 0.95439 1.09478 1.20182 0.99457 0.90736 0.89285 1.60530 1.46655 1.03731 1.21687 1.21811 0.97214 0.87999 0.97489 1.18922 0.94522 0.95022 0.92139 1.21590 1.43943 0.98234 0.94674 0.91960 1.25991 0.95655 1.02926 0.95141 1.70103 1.48684 1.38773 0.99719 0.85455 0.79073 0.78957 0.77267 1.18982 1.20829 1.19179 0.88488 0.89216 0.90147 0.74400 0.82719 0.93910 0.90576 0.84557 0.92260 0.95753 0.98994 0.99004 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.21 71.24 0.73 -0.78 16 2 C -0.02 -0.57 7.32 24.83 0.18 -0.39 16 3 O -0.19 -4.78 10.65 -2.47 -0.03 -4.80 16 4 C -0.04 -0.94 12.09 66.97 0.81 -0.13 16 5 C -0.22 -5.55 10.87 22.19 0.24 -5.31 16 6 C -0.19 -5.49 5.68 -19.94 -0.11 -5.61 16 7 C 0.13 4.04 5.70 85.56 0.49 4.52 16 8 N -0.69 -26.02 6.49 -517.92 -3.36 -29.38 16 9 C 0.08 3.59 5.62 86.30 0.49 4.07 16 10 C 0.03 1.71 5.23 29.85 0.16 1.87 16 11 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 12 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 21 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 22 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 23 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.34 12.31 7.85 -89.69 -0.70 11.60 16 27 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -67.93 270.72 3.00 -64.93 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.40 Total: 12.70 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 3.67 Total: -32.52 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.08 Total: -86.73 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.03 Total: -4.80 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.93 3.00 -64.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591260759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.836 kcal (2) G-P(sol) polarization free energy of solvation -67.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds