Wall clock time and date at job start Sun Mar 29 2020 22:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99594 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47184 * 300.00048 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00164 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00241 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47564 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00594 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47302 * 180.02562 * 11 10 9 13 13 C 1.56128 * 116.03407 * 297.90510 * 12 11 10 14 14 C 1.54578 * 104.67380 * 200.01691 * 13 12 11 15 15 C 1.55919 * 104.64695 * 359.97438 * 14 13 12 16 16 C 1.55928 * 104.49868 * 289.71940 * 15 14 13 17 17 C 1.54719 * 104.64266 * 70.32118 * 16 15 14 18 18 C 1.56948 * 100.65332 * 33.77681 * 15 14 13 19 19 H 0.97001 * 120.00717 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47240 * 60.00210 * 9 7 2 21 21 H 1.08998 * 109.47085 * 300.00411 * 9 7 2 22 22 H 1.00905 * 110.99949 * 303.96261 * 10 9 7 23 23 H 1.09002 * 109.47169 * 59.99854 * 11 10 9 24 24 H 1.09008 * 109.46843 * 300.00282 * 11 10 9 25 25 H 1.09004 * 110.40410 * 81.20703 * 13 12 11 26 26 H 1.08995 * 110.46215 * 318.86204 * 13 12 11 27 27 H 1.09001 * 110.40465 * 241.18153 * 14 13 12 28 28 H 1.09003 * 110.49579 * 118.82016 * 14 13 12 29 29 H 1.09005 * 115.92370 * 160.03212 * 15 14 13 30 30 H 1.09002 * 110.40561 * 189.07170 * 16 15 14 31 31 H 1.09007 * 110.40171 * 311.48804 * 16 15 14 32 32 H 1.09001 * 110.44155 * 241.19102 * 17 16 15 33 33 H 1.09002 * 110.45735 * 118.82134 * 17 16 15 34 34 H 1.09002 * 112.02663 * 63.17522 * 18 15 14 35 35 H 1.09000 * 112.02645 * 189.62084 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5306 -6.0429 -0.0005 13 6 3.4780 -6.1117 -1.2395 14 6 4.0111 -7.5627 -1.2448 15 6 3.3375 -8.2346 -0.0095 16 6 4.0242 -7.5669 1.2209 17 6 3.4898 -6.1149 1.2269 18 6 1.9500 -7.5010 -0.0008 19 1 -0.4851 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8407 -3.5485 -0.7819 23 1 0.8810 -4.9813 -0.8914 24 1 0.8804 -4.9817 0.8887 25 1 4.3005 -5.4051 -1.1287 26 1 2.9232 -5.9073 -2.1552 27 1 5.0957 -7.5694 -1.1367 28 1 3.7183 -8.0735 -2.1621 29 1 3.3062 -9.3242 -0.0177 30 1 3.7396 -8.0797 2.1397 31 1 5.1077 -7.5732 1.1012 32 1 4.3102 -5.4068 1.1102 33 1 2.9434 -5.9139 2.1484 34 1 1.3713 -7.7104 -0.9005 35 1 1.3804 -7.7145 0.9037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:37 Heat of formation + Delta-G solvation = -16.069912 kcal Electronic energy + Delta-G solvation = -13950.811056 eV Core-core repulsion = 11754.538676 eV Total energy + Delta-G solvation = -2196.272380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.04713 -35.07109 -32.45875 -30.24987 -29.67705 -27.65235 -26.42868 -23.46555 -21.94617 -21.29383 -19.53761 -17.99154 -16.48255 -15.35498 -15.16008 -14.86824 -14.50756 -14.11143 -13.20695 -12.63049 -12.39083 -12.14238 -11.84249 -11.50272 -11.36292 -11.04684 -10.95562 -10.79600 -10.69762 -10.61126 -10.49201 -10.38199 -10.01417 -9.76944 -9.59097 -9.11164 -8.45597 -7.20986 -6.00729 -4.02387 3.32505 3.39557 3.44919 4.44508 4.60925 4.62736 4.66408 5.23612 5.33393 5.35179 5.36626 5.47868 5.57393 5.62538 5.64670 5.80352 5.89872 5.95971 6.12365 6.17067 6.20582 6.23446 6.31962 6.36599 6.45482 6.54912 6.65974 6.73137 7.30627 7.46874 7.82495 8.16982 8.46134 8.67339 9.07680 9.62543 11.10539 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.061503 B = 0.006158 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.153046 B = 4545.811772 C = 4651.954184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.686 5.686 11 C 0.088 3.912 12 C -0.065 4.065 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.121 4.121 17 C -0.101 4.101 18 C -0.120 4.120 19 H 0.260 0.740 20 H -0.015 1.015 21 H 0.027 0.973 22 H 0.327 0.673 23 H 0.019 0.981 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 -15.028 -0.765 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.316 5.316 11 C -0.042 4.042 12 C -0.065 4.065 13 C -0.155 4.155 14 C -0.156 4.156 15 C -0.125 4.125 16 C -0.159 4.159 17 C -0.139 4.139 18 C -0.158 4.158 19 H 0.070 0.930 20 H 0.003 0.997 21 H 0.045 0.955 22 H 0.144 0.856 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.940 -14.873 -0.072 16.015 hybrid contribution 0.006 0.933 -0.927 1.316 sum 5.946 -13.940 -1.000 15.188 Atomic orbital electron populations 1.69975 1.06090 1.26624 1.51168 1.24996 0.94868 0.99370 0.95425 0.86436 0.80066 0.83390 0.77480 1.19670 1.21121 1.21001 1.21235 0.93538 0.90277 1.49975 0.91947 1.19556 0.90662 0.87501 0.95683 1.60622 1.21079 1.01071 1.48847 1.21417 0.93966 0.89202 0.99586 1.22894 0.94763 0.93556 0.95292 1.22639 0.98960 0.96075 0.97779 1.22594 0.99495 0.96024 0.97444 1.23519 0.95714 0.97823 0.95462 1.22675 0.99350 0.96551 0.97278 1.22446 0.98669 0.95012 0.97742 1.23570 0.96054 0.95158 1.01027 0.93006 0.99738 0.95487 0.85635 0.96267 0.91670 0.91432 0.92373 0.92136 0.92441 0.89079 0.92427 0.92234 0.91389 0.92017 0.91740 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.17 5.44 -4.98 -0.03 5.15 16 10 N -0.69 -15.02 6.39 -115.06 -0.73 -15.75 16 11 C 0.09 1.62 5.55 -3.83 -0.02 1.60 16 12 C -0.06 -0.96 1.17 -149.13 -0.17 -1.13 16 13 C -0.12 -1.60 5.22 -24.23 -0.13 -1.73 16 14 C -0.12 -1.35 6.21 -24.34 -0.15 -1.50 16 15 C -0.11 -1.19 5.19 -85.36 -0.44 -1.64 16 16 C -0.12 -1.42 6.21 -24.26 -0.15 -1.57 16 17 C -0.10 -1.45 5.80 -24.26 -0.14 -1.60 16 18 C -0.12 -1.52 6.11 -22.46 -0.14 -1.65 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.33 6.91 8.08 -39.29 -0.32 6.59 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 25 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 277.31 15.07 4.18 4.18 Total: -1.00 -29.66 277.31 -8.77 -38.43 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.14 Total: 0.43 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.79 Total: -17.68 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.00 Total: -42.30 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.66 -8.77 -38.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.363 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds