Wall clock time and date at job start Sun Mar 29 2020 22:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99594 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47184 * 300.00048 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00164 * 3 2 1 7 7 C 1.37874 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00241 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47564 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00594 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47302 * 180.02562 * 11 10 9 13 13 C 1.56128 * 116.03407 * 297.90510 * 12 11 10 14 14 C 1.54578 * 104.67380 * 200.01691 * 13 12 11 15 15 C 1.55919 * 104.64695 * 359.97438 * 14 13 12 16 16 C 1.55928 * 104.49868 * 289.71940 * 15 14 13 17 17 C 1.54719 * 104.64266 * 70.32118 * 16 15 14 18 18 C 1.56948 * 100.65332 * 33.77681 * 15 14 13 19 19 H 0.97001 * 120.00717 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47240 * 60.00210 * 9 7 2 21 21 H 1.08998 * 109.47085 * 300.00411 * 9 7 2 22 22 H 1.00905 * 110.99949 * 303.96261 * 10 9 7 23 23 H 1.09002 * 109.47169 * 59.99854 * 11 10 9 24 24 H 1.09008 * 109.46843 * 300.00282 * 11 10 9 25 25 H 1.09004 * 110.40410 * 81.20703 * 13 12 11 26 26 H 1.08995 * 110.46215 * 318.86204 * 13 12 11 27 27 H 1.09001 * 110.40465 * 241.18153 * 14 13 12 28 28 H 1.09003 * 110.49579 * 118.82016 * 14 13 12 29 29 H 1.09005 * 115.92370 * 160.03212 * 15 14 13 30 30 H 1.09002 * 110.40561 * 189.07170 * 16 15 14 31 31 H 1.09007 * 110.40171 * 311.48804 * 16 15 14 32 32 H 1.09001 * 110.44155 * 241.19102 * 17 16 15 33 33 H 1.09002 * 110.45735 * 118.82134 * 17 16 15 34 34 H 1.09002 * 112.02663 * 63.17522 * 18 15 14 35 35 H 1.09000 * 112.02645 * 189.62084 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 6 2.5306 -6.0429 -0.0005 13 6 3.4780 -6.1117 -1.2395 14 6 4.0111 -7.5627 -1.2448 15 6 3.3375 -8.2346 -0.0095 16 6 4.0242 -7.5669 1.2209 17 6 3.4898 -6.1149 1.2269 18 6 1.9500 -7.5010 -0.0008 19 1 -0.4851 0.8400 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8407 -3.5485 -0.7819 23 1 0.8810 -4.9813 -0.8914 24 1 0.8804 -4.9817 0.8887 25 1 4.3005 -5.4051 -1.1287 26 1 2.9232 -5.9073 -2.1552 27 1 5.0957 -7.5694 -1.1367 28 1 3.7183 -8.0735 -2.1621 29 1 3.3062 -9.3242 -0.0177 30 1 3.7396 -8.0797 2.1397 31 1 5.1077 -7.5732 1.1012 32 1 4.3102 -5.4068 1.1102 33 1 2.9434 -5.9139 2.1484 34 1 1.3713 -7.7104 -0.9005 35 1 1.3804 -7.7145 0.9037 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:37 Heat of formation + Delta-G solvation = -34.221996 kcal Electronic energy + Delta-G solvation = -13951.598190 eV Core-core repulsion = 11754.538676 eV Total energy + Delta-G solvation = -2197.059513 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12528 -36.91956 -34.56323 -31.27058 -31.18526 -28.69737 -28.30487 -25.16124 -23.37123 -22.91325 -20.53427 -19.23255 -18.49234 -16.97319 -16.44675 -16.28490 -15.86692 -15.65520 -15.01044 -14.49263 -13.57269 -13.50101 -13.39209 -13.17018 -12.81683 -12.70058 -12.51072 -12.21906 -11.97726 -11.80626 -11.68516 -11.63351 -11.59476 -11.25246 -11.01182 -10.70678 -10.63507 -9.10627 -8.24194 -6.35802 1.40128 1.41087 1.55227 2.39054 3.08961 3.41126 3.56768 3.63297 3.87043 4.20170 4.30899 4.38153 4.49096 4.53692 4.63383 4.65214 4.78291 4.86877 4.93405 4.96102 5.07807 5.15633 5.18936 5.23501 5.26335 5.30068 5.36622 5.47357 5.51934 5.60239 5.61944 6.00753 6.44428 6.71578 6.87973 7.35484 8.87918 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.061503 B = 0.006158 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.153046 B = 4545.811772 C = 4651.954184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.681 5.681 11 C 0.089 3.911 12 C -0.074 4.074 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.094 4.094 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.117 4.117 19 H 0.266 0.734 20 H -0.042 1.042 21 H -0.002 1.002 22 H 0.333 0.667 23 H 0.015 0.985 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 -16.066 -0.986 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.312 5.312 11 C -0.041 4.041 12 C -0.074 4.074 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.112 4.112 16 C -0.153 4.153 17 C -0.140 4.140 18 C -0.155 4.155 19 H 0.074 0.926 20 H -0.024 1.024 21 H 0.016 0.984 22 H 0.150 0.850 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.461 -15.938 -0.296 17.600 hybrid contribution -0.516 1.244 -0.849 1.592 sum 6.945 -14.693 -1.145 16.292 Atomic orbital electron populations 1.70102 1.07880 1.28008 1.51587 1.25991 0.95813 1.03512 0.94504 0.85241 0.78872 0.78077 0.77831 1.18651 1.20160 1.20277 1.21567 0.93783 0.91405 1.50562 0.91781 1.19216 0.90703 0.89153 0.93005 1.60504 1.20254 1.01320 1.49091 1.21456 0.94947 0.88868 0.98797 1.22806 0.94590 0.93583 0.96455 1.22632 0.98230 0.97966 0.96685 1.22583 1.00077 0.94033 0.98366 1.23569 0.93843 0.99122 0.94655 1.22644 0.99956 0.94316 0.98344 1.22432 0.97873 0.97020 0.96699 1.23572 0.97267 0.93224 1.01450 0.92563 1.02389 0.98388 0.85006 0.96702 0.92737 0.92487 0.93005 0.91096 0.91064 0.86265 0.91247 0.91158 0.92958 0.93488 0.91251 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.53 -31.49 9.32 25.60 0.24 -31.25 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.60 5.44 85.56 0.47 12.07 16 10 N -0.68 -30.85 6.39 -517.95 -3.31 -34.16 16 11 C 0.09 3.37 5.55 86.30 0.48 3.85 16 12 C -0.07 -2.16 1.17 -48.69 -0.06 -2.22 16 13 C -0.12 -3.10 5.22 32.22 0.17 -2.93 16 14 C -0.11 -2.25 6.21 32.14 0.20 -2.05 16 15 C -0.09 -1.77 5.19 -7.38 -0.04 -1.81 16 16 C -0.12 -2.39 6.21 32.19 0.20 -2.19 16 17 C -0.10 -2.89 5.80 32.20 0.19 -2.70 16 18 C -0.12 -2.73 6.11 33.36 0.20 -2.52 16 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 20 H -0.04 -2.49 8.14 -2.38 -0.02 -2.51 16 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 22 H 0.33 14.42 8.08 -89.69 -0.72 13.70 16 23 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 25 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.30 7.83 -2.39 -0.02 1.28 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.34 7.83 -2.38 -0.02 1.32 16 32 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.23 277.31 1.83 -62.40 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.31 Total: 13.47 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 2.51 Total: -31.32 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.02 Total: -91.66 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.23 1.83 -62.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.180 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds