Wall clock time and date at job start Sun Mar 29 2020 21:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39878 * 125.89632 * 2 1 4 4 C 1.35318 * 107.91933 * 180.14059 * 3 2 1 5 5 C 1.50697 * 126.12488 * 179.90271 * 4 3 2 6 6 N 1.46905 * 109.47066 * 94.68906 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00162 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00023 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99532 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00003 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47381 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47001 * 119.99934 * 12 10 8 15 15 H 1.48497 * 109.47392 * 239.99632 * 12 10 8 16 16 N 1.34950 * 107.74397 * 359.63644 * 4 3 2 17 17 C 1.46500 * 126.03157 * 180.20273 * 16 4 3 18 18 N 1.30839 * 125.90291 * 179.73502 * 2 1 3 19 19 H 1.08993 * 109.47470 * 270.23577 * 1 2 3 20 20 H 1.09000 * 109.47257 * 30.24357 * 1 2 3 21 21 H 1.09003 * 109.46915 * 150.23730 * 1 2 3 22 22 H 1.07995 * 126.03969 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47558 * 334.69070 * 5 4 3 24 24 H 1.08998 * 109.47216 * 214.68732 * 5 4 3 25 25 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 26 26 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 27 27 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 28 28 H 0.97001 * 119.99132 * 180.02562 * 11 10 8 29 29 H 1.09004 * 109.47038 * 90.00893 * 17 16 4 30 30 H 1.08998 * 109.47098 * 210.00118 * 17 16 4 31 31 H 1.08988 * 109.47721 * 330.00590 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 5.3015 1.7947 1.3728 7 6 6.4927 2.6537 1.4088 8 6 6.9414 2.8307 2.8365 9 1 6.3960 2.3532 3.6371 10 6 8.0476 3.6030 3.1207 11 7 8.7114 4.1848 2.1458 12 14 8.6034 3.8230 4.8904 13 1 7.6938 3.0714 5.7921 14 1 9.9881 3.3081 5.0420 15 1 8.5701 5.2648 5.2443 16 7 3.6088 -0.6340 0.0031 17 6 4.7900 -1.5005 0.0066 18 7 2.2742 -1.0598 0.0049 19 1 -0.3634 0.0042 1.0276 20 1 -0.3634 0.8878 -0.5176 21 1 -0.3633 -0.8921 -0.5102 22 1 1.9922 2.1598 0.0004 23 1 4.5835 2.5646 -0.4452 24 1 5.6233 1.1275 -0.5931 25 1 5.4798 0.9096 1.8232 26 1 7.2927 2.1898 0.8317 27 1 6.2522 3.6264 0.9798 28 1 9.4899 4.7279 2.3458 29 1 5.0833 -1.7108 1.0351 30 1 4.5563 -2.4354 -0.5029 31 1 5.6092 -1.0003 -0.5097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591765706.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:29 Heat of formation + Delta-G solvation = 68.134849 kcal Electronic energy + Delta-G solvation = -13229.869285 eV Core-core repulsion = 10933.707954 eV Total energy + Delta-G solvation = -2296.161331 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.99510 -35.58814 -33.67754 -32.54649 -30.42354 -29.30158 -27.03797 -25.23409 -24.20438 -21.52896 -20.17809 -19.04901 -16.71570 -16.05357 -15.43112 -14.93026 -14.49681 -13.97132 -13.46608 -13.43113 -13.18974 -12.85023 -12.46231 -12.19190 -11.96352 -11.79744 -11.60656 -11.24487 -10.78055 -10.70357 -10.29155 -10.03460 -9.27723 -8.85459 -8.54624 -8.21302 -7.44832 -6.09438 -4.11656 2.10538 2.72392 3.03316 3.27951 3.35557 3.40981 4.39025 4.66973 4.86663 5.17062 5.22180 5.26960 5.31153 5.42744 5.51940 5.58934 5.67129 5.83608 6.01160 6.04940 6.11414 6.53507 6.94158 7.09072 7.26713 7.28691 7.70021 7.97985 8.02716 8.23651 8.47121 8.97198 9.53708 11.01664 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050818 B = 0.005955 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.856397 B = 4700.986491 C = 4806.950463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.066 3.934 3 C -0.261 4.261 4 C 0.105 3.895 5 C 0.118 3.882 6 N -0.680 5.680 7 C 0.194 3.806 8 C -0.515 4.515 9 H 0.063 0.937 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.900 3.100 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.374 5.374 17 C 0.100 3.900 18 N -0.308 5.308 19 H 0.074 0.926 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.145 0.855 23 H 0.092 0.908 24 H 0.031 0.969 25 H 0.328 0.672 26 H -0.012 1.012 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -7.959 -5.452 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.291 4.291 4 C -0.023 4.023 5 C -0.013 4.013 6 N -0.311 5.311 7 C 0.067 3.933 8 C -0.554 4.554 9 H 0.081 0.919 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.728 3.272 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.209 1.209 16 N -0.156 5.156 17 C -0.041 4.041 18 N -0.131 5.131 19 H 0.092 0.908 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.163 0.837 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.144 0.856 26 H 0.006 0.994 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.964 -8.678 -5.360 14.259 hybrid contribution 1.237 0.471 0.589 1.449 sum -8.728 -8.206 -4.771 12.895 Atomic orbital electron populations 1.20118 0.87040 1.02802 1.02710 1.22250 0.96681 0.91016 1.00002 1.21076 0.90900 0.99607 1.17483 1.21254 0.97605 0.83945 0.99451 1.20541 0.90384 0.97091 0.93300 1.60724 1.39058 1.19179 1.12173 1.19618 0.84130 0.92029 0.97475 1.21189 1.11138 1.30616 0.92455 0.91868 1.24984 0.96352 0.95534 0.97617 1.69969 1.19416 1.32788 1.31487 0.86408 0.78334 0.77973 0.84509 1.19637 1.21056 1.20894 1.48339 1.05239 1.04430 1.57638 1.21818 0.84120 0.94657 1.03531 1.77194 0.86408 1.22844 1.26671 0.90761 0.90614 0.91383 0.83692 0.88964 0.95121 0.85563 0.99404 0.94989 0.92875 0.90642 0.89635 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.45 36.00 0.38 -0.36 16 2 C 0.07 1.02 7.22 -82.40 -0.59 0.42 16 3 C -0.26 -4.24 10.65 -40.01 -0.43 -4.67 16 4 C 0.10 1.78 6.44 -82.26 -0.53 1.25 16 5 C 0.12 2.09 5.86 -4.97 -0.03 2.06 16 6 N -0.68 -14.50 6.48 -116.34 -0.75 -15.26 16 7 C 0.19 4.95 5.44 -4.98 -0.03 4.93 16 8 C -0.52 -14.44 9.32 -34.44 -0.32 -14.76 16 9 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 12 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 N -0.37 -6.03 4.01 -63.89 -0.26 -6.29 16 17 C 0.10 1.24 11.27 59.85 0.67 1.91 16 18 N -0.31 -5.19 12.58 33.67 0.42 -4.77 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 23 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.03 0.51 7.24 -51.93 -0.38 0.14 16 25 H 0.33 6.78 8.72 -39.29 -0.34 6.44 16 26 H -0.01 -0.31 8.14 -51.93 -0.42 -0.74 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.96 7.15 -51.94 -0.37 0.59 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -31.72 271.73 -6.19 -37.91 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.44 Total: 1.21 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.97 Total: -7.73 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.15 Total: -51.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.72 -6.19 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765706.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.049 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds