Wall clock time and date at job start Sun Mar 29 2020 21:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39878 * 125.89632 * 2 1 4 4 C 1.35318 * 107.91933 * 180.14059 * 3 2 1 5 5 C 1.50697 * 126.12488 * 179.90271 * 4 3 2 6 6 N 1.46905 * 109.47066 * 94.68906 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00162 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00023 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99532 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00003 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47381 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47001 * 119.99934 * 12 10 8 15 15 H 1.48497 * 109.47392 * 239.99632 * 12 10 8 16 16 N 1.34950 * 107.74397 * 359.63644 * 4 3 2 17 17 C 1.46500 * 126.03157 * 180.20273 * 16 4 3 18 18 N 1.30839 * 125.90291 * 179.73502 * 2 1 3 19 19 H 1.08993 * 109.47470 * 270.23577 * 1 2 3 20 20 H 1.09000 * 109.47257 * 30.24357 * 1 2 3 21 21 H 1.09003 * 109.46915 * 150.23730 * 1 2 3 22 22 H 1.07995 * 126.03969 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.47558 * 334.69070 * 5 4 3 24 24 H 1.08998 * 109.47216 * 214.68732 * 5 4 3 25 25 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 26 26 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 27 27 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 28 28 H 0.97001 * 119.99132 * 180.02562 * 11 10 8 29 29 H 1.09004 * 109.47038 * 90.00893 * 17 16 4 30 30 H 1.08998 * 109.47098 * 210.00118 * 17 16 4 31 31 H 1.08988 * 109.47721 * 330.00590 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 5.3015 1.7947 1.3728 7 6 6.4927 2.6537 1.4088 8 6 6.9414 2.8307 2.8365 9 1 6.3960 2.3532 3.6371 10 6 8.0476 3.6030 3.1207 11 7 8.7114 4.1848 2.1458 12 14 8.6034 3.8230 4.8904 13 1 7.6938 3.0714 5.7921 14 1 9.9881 3.3081 5.0420 15 1 8.5701 5.2648 5.2443 16 7 3.6088 -0.6340 0.0031 17 6 4.7900 -1.5005 0.0066 18 7 2.2742 -1.0598 0.0049 19 1 -0.3634 0.0042 1.0276 20 1 -0.3634 0.8878 -0.5176 21 1 -0.3633 -0.8921 -0.5102 22 1 1.9922 2.1598 0.0004 23 1 4.5835 2.5646 -0.4452 24 1 5.6233 1.1275 -0.5931 25 1 5.4798 0.9096 1.8232 26 1 7.2927 2.1898 0.8317 27 1 6.2522 3.6264 0.9798 28 1 9.4899 4.7279 2.3458 29 1 5.0833 -1.7108 1.0351 30 1 4.5563 -2.4354 -0.5029 31 1 5.6092 -1.0003 -0.5097 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591765706.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:28 Heat of formation + Delta-G solvation = 45.863699 kcal Electronic energy + Delta-G solvation = -13230.835035 eV Core-core repulsion = 10933.707954 eV Total energy + Delta-G solvation = -2297.127080 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.21109 -37.29371 -35.01439 -34.39613 -31.86245 -30.32408 -28.85283 -26.35325 -25.84929 -23.48970 -21.40479 -20.27888 -18.62705 -17.45506 -16.79785 -16.69493 -16.19150 -15.23489 -15.07448 -14.56003 -14.34362 -14.31994 -13.81441 -13.39474 -13.33536 -13.13621 -13.01818 -12.81430 -12.65875 -12.46248 -12.06779 -11.49932 -11.34075 -10.68193 -10.08535 -9.45560 -9.20934 -8.24217 -6.34928 0.84360 1.41155 1.42565 1.55765 1.60647 1.82233 2.39882 3.09842 3.48628 3.61851 3.75866 4.09002 4.22191 4.32050 4.47593 4.53847 4.64000 4.77123 4.87347 4.98892 5.03648 5.10913 5.22314 5.33196 5.58007 5.81656 5.96372 6.07228 6.34188 6.58866 6.77441 6.83399 7.35905 8.87317 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050818 B = 0.005955 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.856397 B = 4700.986491 C = 4806.950463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.062 3.938 3 C -0.272 4.272 4 C 0.090 3.910 5 C 0.125 3.875 6 N -0.681 5.681 7 C 0.209 3.791 8 C -0.537 4.537 9 H 0.061 0.939 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.971 3.029 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.278 1.278 16 N -0.379 5.379 17 C 0.092 3.908 18 N -0.329 5.329 19 H 0.084 0.916 20 H 0.095 0.905 21 H 0.077 0.923 22 H 0.155 0.845 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.332 0.668 26 H -0.029 1.029 27 H 0.008 0.992 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -8.432 -4.839 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.302 4.302 4 C -0.038 4.038 5 C -0.006 4.006 6 N -0.312 5.312 7 C 0.082 3.918 8 C -0.575 4.575 9 H 0.079 0.921 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.204 1.204 16 N -0.162 5.162 17 C -0.049 4.049 18 N -0.153 5.153 19 H 0.103 0.897 20 H 0.114 0.886 21 H 0.096 0.904 22 H 0.173 0.827 23 H 0.111 0.889 24 H 0.060 0.940 25 H 0.149 0.851 26 H -0.012 1.012 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.654 -9.175 -4.756 14.843 hybrid contribution 1.405 0.591 0.342 1.562 sum -9.250 -8.584 -4.414 13.369 Atomic orbital electron populations 1.20279 0.84082 1.04312 1.03829 1.22909 0.98585 0.90148 0.98666 1.21391 0.90993 1.00583 1.17252 1.21131 0.97385 0.84512 1.00779 1.20457 0.91102 0.97697 0.91328 1.60567 1.36818 1.19095 1.14747 1.19258 0.85004 0.91512 0.96061 1.21519 1.11601 1.30945 0.93430 0.92115 1.25879 0.96320 0.94991 1.02105 1.70077 1.19921 1.33336 1.33766 0.85309 0.78057 0.78032 0.79038 1.19003 1.20177 1.20351 1.48625 1.05869 1.04425 1.57261 1.22078 0.83366 0.95160 1.04251 1.77164 0.86887 1.23763 1.27499 0.89700 0.88610 0.90407 0.82690 0.88872 0.93995 0.85105 1.01178 0.97370 0.92510 0.90217 0.87778 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.45 71.24 0.74 -0.55 16 2 C 0.06 1.82 7.22 43.10 0.31 2.13 16 3 C -0.27 -8.55 10.65 21.99 0.23 -8.31 16 4 C 0.09 2.97 6.44 41.40 0.27 3.24 16 5 C 0.12 4.37 5.86 85.55 0.50 4.87 16 6 N -0.68 -29.03 6.48 -521.98 -3.38 -32.41 16 7 C 0.21 10.86 5.44 85.56 0.47 11.32 16 8 C -0.54 -30.18 9.32 25.60 0.24 -29.94 16 9 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 10 C 0.01 0.32 5.46 84.66 0.46 0.78 16 11 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 12 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 16 N -0.38 -11.84 4.01 -356.04 -1.43 -13.27 16 17 C 0.09 2.16 11.27 127.77 1.44 3.60 16 18 N -0.33 -10.68 12.58 -47.38 -0.60 -11.28 16 19 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 23 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 24 H 0.04 1.38 7.24 -2.39 -0.02 1.37 16 25 H 0.33 13.66 8.72 -89.69 -0.78 12.88 16 26 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 27 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.02 7.15 -2.39 -0.02 2.00 16 Total: -1.00 -66.47 271.73 1.90 -64.57 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.33 Total: 14.19 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.66 Total: -12.85 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.12 Total: -111.65 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.47 1.90 -64.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591765706.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.431 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds