Wall clock time and date at job start Sun Mar 29 2020 21:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47473 * 2 1 4 4 N 1.46901 * 109.46816 * 120.00444 * 2 1 3 5 5 C 1.46903 * 110.99767 * 274.99752 * 4 2 1 6 6 C 1.50703 * 109.47292 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99627 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99676 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00189 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47274 * 90.00046 * 10 8 6 12 12 H 1.48501 * 109.46696 * 209.99995 * 10 8 6 13 13 H 1.48497 * 109.47072 * 329.99701 * 10 8 6 14 14 C 1.50703 * 109.47162 * 240.00078 * 2 1 3 15 15 C 1.39863 * 125.90145 * 85.28357 * 14 2 1 16 16 C 1.35312 * 107.92527 * 180.14385 * 15 14 2 17 17 N 1.34953 * 107.74266 * 359.64076 * 16 15 14 18 18 C 1.46501 * 126.03725 * 180.20624 * 17 16 15 19 19 N 1.30837 * 125.89875 * 265.02692 * 14 2 1 20 20 H 1.08995 * 109.47390 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47195 * 300.00230 * 1 2 3 22 22 H 1.09006 * 109.47132 * 59.99943 * 1 2 3 23 23 H 1.00896 * 110.99711 * 151.04808 * 4 2 1 24 24 H 1.08997 * 109.47238 * 300.00345 * 5 4 2 25 25 H 1.08998 * 109.46902 * 59.99816 * 5 4 2 26 26 H 0.97001 * 120.00030 * 180.02562 * 9 8 6 27 27 H 1.08008 * 126.03762 * 0.02562 * 15 14 2 28 28 H 1.08002 * 126.13302 * 179.91107 * 16 15 14 29 29 H 1.08999 * 109.47001 * 90.00027 * 18 17 16 30 30 H 1.09001 * 109.47118 * 210.00454 * 18 17 16 31 31 H 1.08997 * 109.46734 * 329.99965 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5884 -0.5217 3.5558 7 1 2.8379 -1.5696 3.4794 8 6 2.7327 0.1355 4.7592 9 7 3.1738 -0.5141 5.8143 10 14 2.3004 1.9480 4.8915 11 1 0.8713 2.0897 5.2691 12 1 3.1518 2.5855 5.9278 13 1 2.5346 2.6095 3.5828 14 6 2.0323 -0.7104 -1.2305 15 6 2.2179 -0.1347 -2.4916 16 6 2.6763 -1.0969 -3.3253 17 7 2.7848 -2.2391 -2.6148 18 6 3.2489 -3.5313 -3.1259 19 7 2.3747 -1.9711 -1.3024 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 2.9172 -1.1206 1.0287 24 1 2.7587 1.0461 2.1183 25 1 1.0870 0.6162 2.5525 26 1 3.2750 -0.0519 6.6611 27 1 2.0270 0.8954 -2.7541 28 1 2.9168 -0.9721 -4.3707 29 1 4.3294 -3.6041 -3.0020 30 1 2.7647 -4.3360 -2.5728 31 1 2.9980 -3.6150 -4.1833 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:08 Heat of formation + Delta-G solvation = 80.659080 kcal Electronic energy + Delta-G solvation = -13366.248297 eV Core-core repulsion = 11070.630057 eV Total energy + Delta-G solvation = -2295.618239 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.01607 -36.28981 -33.24448 -32.19981 -30.03687 -29.80318 -26.59155 -26.33744 -22.66385 -21.23723 -20.53411 -19.06051 -17.07782 -16.50953 -15.38467 -15.00496 -14.49606 -13.95427 -13.59824 -13.54346 -13.05269 -12.56624 -12.45666 -12.39774 -11.85871 -11.62987 -11.46983 -10.88157 -10.57271 -10.39560 -10.23833 -9.76627 -9.22945 -9.03074 -8.52212 -8.42507 -7.35739 -5.98911 -3.96139 2.03608 2.64050 2.98510 3.33923 3.40497 3.43435 4.48032 4.54665 4.77242 5.03582 5.10126 5.13921 5.33803 5.34479 5.60538 5.83158 5.88576 5.91819 6.06505 6.26191 6.40473 6.67695 6.83586 6.86996 7.10555 7.12250 7.68084 7.88239 8.06019 8.47188 8.74134 9.10751 9.63198 11.14597 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048777 B = 0.006899 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.899296 B = 4057.394696 C = 4380.295801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 H 0.053 0.947 4 N -0.669 5.669 5 C 0.163 3.837 6 C -0.512 4.512 7 H 0.079 0.921 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.079 3.921 15 C -0.269 4.269 16 C 0.044 3.956 17 N -0.385 5.385 18 C 0.104 3.896 19 N -0.267 5.267 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.049 0.951 23 H 0.342 0.658 24 H -0.016 1.016 25 H 0.024 0.976 26 H 0.263 0.737 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -0.033 -19.602 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.046 3.954 3 H 0.071 0.929 4 N -0.301 5.301 5 C 0.035 3.965 6 C -0.551 4.551 7 H 0.097 0.903 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.705 3.295 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.089 4.089 15 C -0.299 4.299 16 C -0.101 4.101 17 N -0.167 5.167 18 C -0.038 4.038 19 N -0.089 5.089 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.160 0.840 24 H 0.001 0.999 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.162 0.838 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.876 -1.519 -18.676 18.831 hybrid contribution 0.573 2.213 -0.616 2.367 sum -1.303 0.694 -19.292 19.348 Atomic orbital electron populations 1.21720 0.93854 1.02395 1.00868 1.19981 0.95769 0.94240 0.85375 0.92929 1.60500 1.33875 1.33245 1.02486 1.20079 0.95613 0.91265 0.89563 1.21073 1.43001 0.98709 0.92274 0.90282 1.24907 0.94884 0.97974 0.95633 1.69907 1.46938 1.36472 1.00824 0.86824 0.78710 0.85979 0.78033 1.20118 1.21289 1.19200 1.22575 0.98422 0.91685 0.96193 1.21369 1.14365 1.00926 0.93262 1.22432 1.02396 0.86719 0.98585 1.48648 1.51399 1.08921 1.07771 1.21782 1.00381 0.82337 0.99258 1.77544 1.19556 1.16500 0.95306 0.92062 0.91885 0.93229 0.83970 0.99872 0.95804 0.92734 0.83787 0.81348 0.90970 0.89287 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.40 37.16 0.35 -1.83 16 2 C 0.16 2.96 3.09 -68.86 -0.21 2.75 16 3 H 0.05 0.96 7.80 -51.93 -0.40 0.55 16 4 N -0.67 -15.20 6.19 -109.22 -0.68 -15.87 16 5 C 0.16 4.13 4.31 -4.97 -0.02 4.11 16 6 C -0.51 -15.27 9.87 -34.44 -0.34 -15.61 16 7 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 10 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 14 C 0.08 1.37 5.96 -82.41 -0.49 0.88 16 15 C -0.27 -3.77 10.74 -40.02 -0.43 -4.20 16 16 C 0.04 0.53 11.49 -17.22 -0.20 0.33 16 17 N -0.39 -5.25 4.01 -68.16 -0.27 -5.52 16 18 C 0.10 0.91 11.47 59.85 0.69 1.60 16 19 N -0.27 -4.81 12.04 33.67 0.41 -4.41 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.06 1.08 7.45 -51.93 -0.39 0.69 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.34 7.97 8.05 -39.29 -0.32 7.65 16 24 H -0.02 -0.41 7.11 -51.93 -0.37 -0.78 16 25 H 0.02 0.60 6.86 -51.93 -0.36 0.25 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -34.34 266.69 -5.56 -39.90 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.38 Total: 2.24 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.75 Total: -10.06 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.23 Total: -53.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.34 -5.56 -39.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.557 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds