Wall clock time and date at job start Sun Mar 29 2020 21:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47473 * 2 1 4 4 N 1.46901 * 109.46816 * 120.00444 * 2 1 3 5 5 C 1.46903 * 110.99767 * 274.99752 * 4 2 1 6 6 C 1.50703 * 109.47292 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99627 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99800 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99676 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00189 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47274 * 90.00046 * 10 8 6 12 12 H 1.48501 * 109.46696 * 209.99995 * 10 8 6 13 13 H 1.48497 * 109.47072 * 329.99701 * 10 8 6 14 14 C 1.50703 * 109.47162 * 240.00078 * 2 1 3 15 15 C 1.39863 * 125.90145 * 85.28357 * 14 2 1 16 16 C 1.35312 * 107.92527 * 180.14385 * 15 14 2 17 17 N 1.34953 * 107.74266 * 359.64076 * 16 15 14 18 18 C 1.46501 * 126.03725 * 180.20624 * 17 16 15 19 19 N 1.30837 * 125.89875 * 265.02692 * 14 2 1 20 20 H 1.08995 * 109.47390 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47195 * 300.00230 * 1 2 3 22 22 H 1.09006 * 109.47132 * 59.99943 * 1 2 3 23 23 H 1.00896 * 110.99711 * 151.04808 * 4 2 1 24 24 H 1.08997 * 109.47238 * 300.00345 * 5 4 2 25 25 H 1.08998 * 109.46902 * 59.99816 * 5 4 2 26 26 H 0.97001 * 120.00030 * 180.02562 * 9 8 6 27 27 H 1.08008 * 126.03762 * 0.02562 * 15 14 2 28 28 H 1.08002 * 126.13302 * 179.91107 * 16 15 14 29 29 H 1.08999 * 109.47001 * 90.00027 * 18 17 16 30 30 H 1.09001 * 109.47118 * 210.00454 * 18 17 16 31 31 H 1.08997 * 109.46734 * 329.99965 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5884 -0.5217 3.5558 7 1 2.8379 -1.5696 3.4794 8 6 2.7327 0.1355 4.7592 9 7 3.1738 -0.5141 5.8143 10 14 2.3004 1.9480 4.8915 11 1 0.8713 2.0897 5.2691 12 1 3.1518 2.5855 5.9278 13 1 2.5346 2.6095 3.5828 14 6 2.0323 -0.7104 -1.2305 15 6 2.2179 -0.1347 -2.4916 16 6 2.6763 -1.0969 -3.3253 17 7 2.7848 -2.2391 -2.6148 18 6 3.2489 -3.5313 -3.1259 19 7 2.3747 -1.9711 -1.3024 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 2.9172 -1.1206 1.0287 24 1 2.7587 1.0461 2.1183 25 1 1.0870 0.6162 2.5525 26 1 3.2750 -0.0519 6.6611 27 1 2.0270 0.8954 -2.7541 28 1 2.9168 -0.9721 -4.3707 29 1 4.3294 -3.6041 -3.0020 30 1 2.7647 -4.3360 -2.5728 31 1 2.9980 -3.6150 -4.1833 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:08 Heat of formation + Delta-G solvation = 54.432009 kcal Electronic energy + Delta-G solvation = -13367.385588 eV Core-core repulsion = 11070.630057 eV Total energy + Delta-G solvation = -2296.755531 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07849 -37.88267 -35.01609 -33.77831 -31.60196 -30.92560 -28.45245 -27.39958 -24.23634 -22.77904 -21.80315 -20.39384 -18.91935 -17.85044 -16.70659 -16.40315 -16.22113 -15.46592 -15.16734 -14.57856 -14.54013 -14.14405 -13.80576 -13.49913 -13.23557 -13.10907 -12.90539 -12.63590 -12.28815 -11.98084 -11.82577 -11.52715 -11.39850 -10.80335 -10.17835 -9.44701 -9.13254 -8.29849 -6.34965 1.03227 1.35786 1.38399 1.49723 1.74970 1.86765 2.35287 3.03841 3.38779 3.61826 4.01913 4.17393 4.33474 4.45946 4.48294 4.70626 4.75004 4.78517 4.88714 4.94666 4.95616 5.08812 5.15829 5.32262 5.54662 5.69394 5.96939 6.26907 6.54012 6.60960 6.72552 6.91557 7.29786 8.87408 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048777 B = 0.006899 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.899296 B = 4057.394696 C = 4380.295801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.156 3.844 3 H 0.060 0.940 4 N -0.681 5.681 5 C 0.176 3.824 6 C -0.531 4.531 7 H 0.030 0.970 8 C 0.006 3.994 9 N -0.949 5.949 10 Si 0.956 3.044 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.248 1.248 14 C 0.056 3.944 15 C -0.287 4.287 16 C 0.064 3.936 17 N -0.386 5.386 18 C 0.094 3.906 19 N -0.325 5.325 20 H 0.044 0.956 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.333 0.667 24 H -0.012 1.012 25 H 0.032 0.968 26 H 0.268 0.732 27 H 0.165 0.835 28 H 0.221 0.779 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 1.832 -22.234 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.044 3.956 3 H 0.078 0.922 4 N -0.312 5.312 5 C 0.047 3.953 6 C -0.569 4.569 7 H 0.048 0.952 8 C -0.191 4.191 9 N -0.590 5.590 10 Si 0.778 3.222 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.172 1.172 14 C -0.110 4.110 15 C -0.317 4.317 16 C -0.082 4.082 17 N -0.169 5.169 18 C -0.046 4.046 19 N -0.148 5.148 20 H 0.063 0.937 21 H 0.075 0.925 22 H 0.100 0.900 23 H 0.150 0.850 24 H 0.005 0.995 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.183 0.817 28 H 0.237 0.763 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.307 0.329 -21.329 21.456 hybrid contribution 0.763 1.462 0.111 1.653 sum -1.544 1.791 -21.218 21.349 Atomic orbital electron populations 1.21675 0.92592 1.01725 1.02134 1.20062 0.96718 0.94360 0.84460 0.92198 1.60422 1.33404 1.33529 1.03834 1.19825 0.95469 0.91053 0.88911 1.21327 1.43703 0.97084 0.94758 0.95182 1.25945 0.94356 1.03973 0.94821 1.70069 1.48120 1.39102 1.01701 0.85589 0.79016 0.78592 0.78985 1.18685 1.20484 1.17177 1.22477 0.99582 0.92070 0.96825 1.21673 1.15318 1.02541 0.92136 1.23206 0.99583 0.85164 1.00256 1.49004 1.50439 1.10866 1.06583 1.22161 1.00864 0.80263 1.01300 1.77426 1.21628 1.17332 0.98445 0.93661 0.92511 0.89963 0.84975 0.99482 0.95043 0.92294 0.81723 0.76252 0.89981 0.90172 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 9.40 71.98 0.68 -3.32 16 2 C 0.16 5.73 3.09 44.17 0.14 5.87 16 3 H 0.06 2.11 7.80 -2.39 -0.02 2.09 16 4 N -0.68 -31.66 6.19 -499.46 -3.09 -34.76 16 5 C 0.18 8.99 4.31 85.56 0.37 9.36 16 6 C -0.53 -32.75 9.87 25.60 0.25 -32.50 16 7 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 8 C 0.01 0.38 5.47 84.65 0.46 0.84 16 9 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 10 Si 0.96 45.29 27.47 68.60 1.88 47.17 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 14 C 0.06 1.92 5.96 43.10 0.26 2.18 16 15 C -0.29 -7.30 10.74 21.99 0.24 -7.07 16 16 C 0.06 1.29 11.49 83.54 0.96 2.25 16 17 N -0.39 -9.76 4.01 -369.56 -1.48 -11.24 16 18 C 0.09 1.42 11.47 127.77 1.47 2.89 16 19 N -0.32 -11.69 12.04 -47.39 -0.57 -12.26 16 20 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.06 1.88 7.45 -2.39 -0.02 1.87 16 22 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.33 16.25 8.05 -89.70 -0.72 15.53 16 24 H -0.01 -0.62 7.11 -2.39 -0.02 -0.64 16 25 H 0.03 1.56 6.86 -2.39 -0.02 1.55 16 26 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 27 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 28 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.69 266.69 2.19 -75.50 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.33 Total: 16.31 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.82 Total: -19.50 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -4.85 Total: -119.48 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -77.69 2.19 -75.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.930 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds