Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 C 1.50705 * 109.46848 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00023 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99539 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00388 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99416 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47563 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46759 * 120.00195 * 10 8 6 13 13 H 1.48502 * 109.46991 * 239.99766 * 10 8 6 14 14 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 15 15 C 1.39861 * 125.90228 * 275.00283 * 14 2 1 16 16 C 1.35316 * 107.92251 * 179.97438 * 15 14 2 17 17 N 1.34951 * 107.74757 * 0.02562 * 16 15 14 18 18 C 1.46490 * 126.04205 * 179.97438 * 17 16 15 19 19 N 1.30837 * 125.89446 * 94.69220 * 14 2 1 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 24 24 H 1.09000 * 109.47514 * 299.99609 * 5 4 2 25 25 H 1.08999 * 109.47620 * 60.00050 * 5 4 2 26 26 H 0.97001 * 119.99568 * 179.97438 * 9 8 6 27 27 H 1.08004 * 126.04049 * 359.97438 * 15 14 2 28 28 H 1.07998 * 126.12811 * 179.97438 * 16 15 14 29 29 H 1.09004 * 109.47201 * 89.99371 * 18 17 16 30 30 H 1.09001 * 109.47561 * 209.99890 * 18 17 16 31 31 H 1.09009 * 109.47037 * 329.99900 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 6 2.5886 -0.5213 -3.5557 7 1 2.8382 -1.5692 -3.4794 8 6 2.7319 0.1357 -4.7594 9 7 2.4275 1.4118 -4.8525 10 14 3.3599 -0.7864 -6.2577 11 1 3.6294 -2.2002 -5.8919 12 1 2.3360 -0.7402 -7.3324 13 1 4.6129 -0.1520 -6.7402 14 6 2.0324 -0.7104 1.2304 15 6 2.2127 -0.1361 2.4929 16 6 2.6755 -1.0972 3.3254 17 7 2.7848 -2.2392 2.6147 18 6 3.2498 -3.5311 3.1255 19 7 2.3699 -1.9724 1.3036 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 2.9174 -1.1204 -1.0288 24 1 1.0871 0.6165 -2.5525 25 1 2.7589 1.0464 -2.1182 26 1 2.5288 1.8740 -5.6993 27 1 2.0170 0.8928 2.7568 28 1 2.9153 -0.9726 4.3710 29 1 2.4000 -4.0998 3.5029 30 1 3.7314 -4.0877 2.3215 31 1 3.9642 -3.3670 3.9323 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 76.167690 kcal Electronic energy + Delta-G solvation = -13323.301341 eV Core-core repulsion = 11027.488340 eV Total energy + Delta-G solvation = -2295.813001 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95254 -36.12164 -33.22598 -32.17432 -29.85244 -29.59374 -26.43599 -25.95982 -22.76677 -21.30517 -20.61451 -18.92865 -16.98767 -16.17821 -15.33803 -14.74680 -14.60584 -13.97627 -13.58882 -13.38763 -12.93338 -12.46005 -12.37408 -12.17945 -11.55998 -11.37905 -11.30880 -10.85044 -10.60376 -10.38887 -10.26776 -9.78716 -9.13710 -8.94254 -8.41602 -8.36111 -7.16389 -5.96179 -3.96883 2.08656 2.69011 3.05652 3.36146 3.42962 3.49287 4.49524 4.59309 4.84797 5.09281 5.13525 5.29345 5.36097 5.40043 5.71122 5.93484 5.98772 6.04610 6.14264 6.39695 6.55607 6.78391 6.93551 7.17378 7.34492 7.51519 7.86456 8.01199 8.23406 8.53491 8.73435 9.13367 9.67554 11.15185 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045810 B = 0.006580 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.071473 B = 4254.053478 C = 4650.152433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.160 3.840 3 H 0.054 0.946 4 N -0.679 5.679 5 C 0.192 3.808 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.082 3.918 15 C -0.269 4.269 16 C 0.043 3.957 17 N -0.387 5.387 18 C 0.105 3.895 19 N -0.270 5.270 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.335 0.665 24 H 0.030 0.970 25 H -0.014 1.014 26 H 0.260 0.740 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 -4.745 16.874 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.071 0.929 4 N -0.310 5.310 5 C 0.065 3.935 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.086 4.086 15 C -0.299 4.299 16 C -0.102 4.102 17 N -0.169 5.169 18 C -0.037 4.037 19 N -0.092 5.092 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.152 0.848 24 H 0.049 0.951 25 H 0.004 0.996 26 H 0.069 0.931 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.060 -6.108 16.013 17.139 hybrid contribution 1.074 0.913 -0.020 1.410 sum 1.134 -5.194 15.993 16.854 Atomic orbital electron populations 1.21705 0.93973 1.02094 1.00918 1.19956 0.95660 0.94303 0.85283 0.92878 1.60685 1.33235 1.34118 1.03011 1.19643 0.96546 0.90221 0.87051 1.21241 1.42782 0.96810 0.93974 0.91914 1.24983 0.95785 0.94904 0.98967 1.69977 1.49212 1.09001 1.25718 0.86439 0.78313 0.80004 0.82641 1.19682 1.21025 1.21165 1.22659 0.98135 0.91525 0.96274 1.21393 1.14237 1.00999 0.93254 1.22422 1.02525 0.86801 0.98489 1.48640 1.51521 1.08865 1.07903 1.21760 0.99881 0.82058 0.99989 1.77530 1.19846 1.16502 0.95278 0.92365 0.93415 0.91689 0.84774 0.95147 0.99633 0.93059 0.83768 0.81407 0.91162 0.89323 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.40 37.16 0.35 -1.95 16 2 C 0.16 3.16 3.09 -68.86 -0.21 2.95 16 3 H 0.05 1.05 7.80 -51.93 -0.40 0.65 16 4 N -0.68 -15.95 6.19 -109.21 -0.68 -16.63 16 5 C 0.19 5.25 5.24 -4.97 -0.03 5.22 16 6 C -0.51 -15.04 9.32 -34.44 -0.32 -15.36 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 10 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.08 1.47 5.95 -82.41 -0.49 0.98 16 15 C -0.27 -3.94 10.74 -40.02 -0.43 -4.37 16 16 C 0.04 0.53 11.49 -17.22 -0.20 0.33 16 17 N -0.39 -5.41 4.01 -68.16 -0.27 -5.68 16 18 C 0.10 0.94 11.47 59.84 0.69 1.62 16 19 N -0.27 -4.96 12.05 33.67 0.41 -4.56 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.06 1.22 7.45 -51.93 -0.39 0.83 16 23 H 0.33 7.96 8.06 -39.29 -0.32 7.64 16 24 H 0.03 0.88 7.44 -51.93 -0.39 0.49 16 25 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 LS Contribution 270.31 15.07 4.07 4.07 Total: -1.00 -33.68 270.31 -5.91 -39.59 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.42 Total: 1.68 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.74 Total: -9.06 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.19 Total: -53.59 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.68 -5.91 -39.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.758 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds