Wall clock time and date at job start Sun Mar 29 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 N 1.46905 * 109.46965 * 95.23369 * 7 6 5 9 9 C 1.46899 * 110.99581 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47052 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99905 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00602 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00785 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47250 * 89.99595 * 14 12 10 16 16 H 1.48491 * 109.47383 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47007 * 330.00256 * 14 12 10 18 18 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 19 19 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 21 21 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 22 22 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 23 23 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 24 24 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 25 25 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 26 26 H 1.09001 * 109.47131 * 215.23144 * 7 6 5 27 27 H 1.08998 * 109.46844 * 335.23437 * 7 6 5 28 28 H 1.00899 * 110.99775 * 56.04551 * 8 7 6 29 29 H 1.08993 * 109.47372 * 299.99772 * 9 8 7 30 30 H 1.09002 * 109.47389 * 60.00371 * 9 8 7 31 31 H 0.96999 * 120.00635 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 7 3.1984 4.7918 -2.4374 9 6 3.1511 6.0625 -3.1729 10 6 4.1519 6.0286 -4.2990 11 1 4.7618 5.1506 -4.4532 12 6 4.2884 7.1178 -5.1332 13 7 3.5455 8.1867 -4.9458 14 14 5.5284 7.0755 -6.5296 15 1 4.8801 6.5344 -7.7511 16 1 6.0193 8.4510 -6.7976 17 1 6.6717 6.2071 -6.1501 18 7 1.6801 2.3750 -0.9275 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.3185 1.4127 1.7363 25 1 3.6964 3.9234 1.0680 26 1 1.2272 4.9270 -1.7233 27 1 2.4693 5.6006 -0.6407 28 1 3.0413 4.0098 -3.0553 29 1 2.1508 6.2099 -3.5797 30 1 3.3930 6.8828 -2.4970 31 1 3.6417 8.9532 -5.5324 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:00 Heat of formation + Delta-G solvation = 71.293894 kcal Electronic energy + Delta-G solvation = -13018.407070 eV Core-core repulsion = 10722.382726 eV Total energy + Delta-G solvation = -2296.024344 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91211 -35.59303 -34.13668 -32.36403 -30.29056 -29.27115 -27.24058 -24.71345 -22.77800 -21.32810 -20.89724 -19.28034 -17.01688 -16.23563 -15.37385 -14.66887 -14.49177 -14.18889 -13.96321 -13.50142 -13.07596 -12.51634 -12.28439 -12.23192 -11.89352 -11.52045 -11.31126 -11.11774 -10.69234 -10.64080 -10.23895 -9.92615 -9.17360 -8.98918 -8.43057 -8.30602 -7.22410 -5.97985 -3.99459 2.11025 2.65511 3.10804 3.36212 3.41751 3.47162 4.44211 4.48903 4.80878 4.90758 5.01045 5.13353 5.37593 5.37981 5.54868 5.64235 5.70242 5.93563 6.01651 6.17636 6.26664 6.42564 6.94945 7.22101 7.29578 7.48163 7.83819 8.02148 8.17598 8.45549 8.66042 9.09632 9.65039 11.13260 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057515 B = 0.005319 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.716797 B = 5262.620127 C = 5357.517458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.381 5.381 4 C 0.041 3.959 5 C -0.253 4.253 6 C 0.092 3.908 7 C 0.136 3.864 8 N -0.683 5.683 9 C 0.193 3.807 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 N -0.294 5.294 19 H 0.071 0.929 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.168 0.832 25 H 0.146 0.854 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.332 0.668 29 H -0.012 1.012 30 H 0.030 0.970 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -14.379 11.895 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.164 5.164 4 C -0.105 4.105 5 C -0.283 4.283 6 C -0.075 4.075 7 C 0.005 3.995 8 N -0.314 5.314 9 C 0.067 3.933 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.117 5.117 19 H 0.090 0.910 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.185 0.815 25 H 0.164 0.836 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.148 0.852 29 H 0.006 0.994 30 H 0.049 0.951 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.400 -14.702 11.415 19.126 hybrid contribution 0.433 0.273 -0.579 0.773 sum -3.967 -14.429 10.836 18.476 Atomic orbital electron populations 1.22047 0.94084 1.02476 1.03648 1.21575 0.95873 0.78050 1.03310 1.48656 1.36185 1.09906 1.21657 1.22447 0.96379 0.95064 0.96565 1.21408 1.08870 0.96354 1.01619 1.22491 0.94908 0.94947 0.95143 1.20255 0.95236 0.89658 0.94360 1.60690 1.49867 1.07564 1.13297 1.19590 0.95542 0.85754 0.92430 1.21183 1.20639 1.01166 1.12096 0.91975 1.24979 0.96300 0.95374 0.97910 1.69965 1.40052 1.04954 1.38862 0.86475 0.81490 0.77171 0.82138 1.20758 1.21243 1.19781 1.77289 1.24462 0.96807 1.13170 0.91027 0.92245 0.90991 0.90088 0.89085 0.81460 0.83641 0.94847 0.89821 0.85163 0.99405 0.95146 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.10 37.16 0.38 -1.07 16 2 C 0.13 1.24 7.23 -4.04 -0.03 1.21 16 3 N -0.38 -5.28 3.68 -61.37 -0.23 -5.50 16 4 C 0.04 0.52 11.45 -17.22 -0.20 0.32 16 5 C -0.25 -3.90 10.74 -40.02 -0.43 -4.33 16 6 C 0.09 1.66 6.73 -82.41 -0.55 1.11 16 7 C 0.14 2.69 6.25 -4.97 -0.03 2.66 16 8 N -0.68 -15.85 6.48 -116.34 -0.75 -16.60 16 9 C 0.19 5.26 5.44 -4.98 -0.03 5.24 16 10 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 11 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 N -0.29 -5.22 12.42 33.67 0.42 -4.80 16 19 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 24 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 25 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.33 7.70 8.72 -39.29 -0.34 7.36 16 29 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -33.06 273.58 -6.57 -39.63 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.53 Total: 1.28 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.31 Total: -8.66 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.18 Total: -53.51 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.06 -6.57 -39.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.922 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds